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RNA_polymerase_RPO35

Euk-Vir

Mythimna_separata_entomopoxvirus_L

RNA_polymerase_RPO35__YP_008003593__Mythimna_separata_entomopoxvirus_L__1293572

Identity

Accession:
YP_008003593 ↗
Protein ID:
RNA_polymerase_RPO35
Kingdom:
euk

Quality

78.2 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-187
PDB
Domain cluster: rep: RNA_polymerase_RPO35__YP_008004474__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D40-183
D2 medium residues 1-37_195-221
PDB
Domain cluster: rep: RNA_polymerase_RPO35__YP_008004474__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D1-35_198-219
D3 medium residues 222-341
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 47.0 4.80e-01 98.3% 65.2%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.61 36.0 2.90e-01 100.0% 29.0%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.58 36.0 4.27e-01 95.0% 96.1%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 36.0 3.74e-01 94.2% 70.3%
1d0xA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 45.0 4.35e-01 99.2% 76.6%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 33.0 3.58e-01 93.3% 68.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 28.0 2.88e-01 95.8% 50.4%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 38.0 3.70e-01 72.5% 99.2%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 35.0 3.77e-01 94.2% 79.8%
3k6kA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 31.0 2.35e-01 78.3% 23.6%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 32.0 3.50e-01 90.0% 72.3%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.51 37.0 3.59e-01 95.8% 65.7%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.51 35.0 3.33e-01 100.0% 58.7%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.50 45.0 3.73e-01 100.0% 58.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617040 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 42.0 3.50e-01 99.2% 39.5%
3399224 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 40.0 3.47e-01 100.0% 42.8%
4574041 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.63 39.0 3.49e-01 98.3% 44.1%
3265742 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.62 37.0 2.92e-01 97.5% 27.3%
5013330 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 39.0 4.45e-01 78.3% 85.6%
4937804 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 41.0 4.07e-01 100.0% 68.0%
4825869 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.58 44.0 3.99e-01 84.2% 57.4%
5078462 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.57 43.0 3.28e-01 100.0% 34.9%
4997864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.84e-01 75.0% 72.5%
3987940 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.55 37.0 2.51e-01 97.5% 19.8%
1150630 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.54 32.0 3.26e-01 79.2% 57.3%
3976270 601.27.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053 0.53 35.0 3.18e-01 100.0% 47.9%
4955372 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.17e-01 80.0% 99.1%
3253771 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.53 43.0 3.50e-01 88.3% 91.7%
3517652 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 46.0 3.41e-01 99.2% 95.7%
4957247 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 37.0 3.94e-01 88.3% 84.8%
4999971 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 37.0 4.25e-01 99.2% 100.0%
3610234 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 29.0 3.08e-01 88.3% 61.8%
4405736 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 46.0 3.47e-01 99.2% 91.8%
3502500 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.52 40.0 3.52e-01 89.2% 56.0%
3935935 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.52 43.0 3.49e-01 90.8% 91.1%
4982107 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.51 38.0 2.60e-01 99.2% 21.9%
3591757 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.51 43.0 3.41e-01 90.8% 88.2%
3504548 3914.1.1.1 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin 0.51 45.0 3.63e-01 100.0% 51.8%
5001428 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 32.0 3.81e-01 70.8% 100.0%
3967597 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 27.0 3.10e-01 94.2% 70.6%
3615409 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.50 37.0 3.99e-01 100.0% 89.5%
3978824 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.50 46.0 4.06e-01 100.0% 87.1%
2760149 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.50 30.0 3.32e-01 79.2% 75.0%