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RNA_polymerase
Euk-VirBell_pepper_mottle_virus
RNA_polymerase__YP_001333651__Bell_pepper_mottle_virus__368735
Identity
- Accession:
- YP_001333651 ↗
- Protein ID:
- RNA_polymerase
- Kingdom:
- euk
Quality
90.1
mean pLDDT
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 94-210_252-307
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 113.7 | 1.40e-32 | 67.6% | 26.1% |
| PF00978.27 | RdRP_2 | 71.6 | 8.60e-20 | 33.5% | 12.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3938749 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 66.0 | 5.12e-01 | 100.0% | 65.1% |
| 3258406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 65.0 | 4.51e-01 | 100.0% | 41.9% |
| 3877925 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 65.0 | 5.00e-01 | 100.0% | 61.0% |
| 4188583 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.69 | 64.0 | 4.75e-01 | 100.0% | 53.3% |
| 3254023 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.68 | 52.0 | 4.90e-01 | 79.2% | 99.0% |
| 3923013 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.65 | 60.0 | 4.75e-01 | 100.0% | 63.5% |
| 4625844 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.52 | 18.0 | 2.74e-01 | 83.2% | 71.4% |
| 3705222 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.52 | 22.0 | 2.94e-01 | 80.3% | 70.5% |
D2
high
residues 378-460
Domain cluster:
rep: RdRp__YP_009388601__Aedes_camptorhynchus_negev-like_virus_Viruses.__X__D397-476
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 69.7 | 3.30e-19 | 100.0% | 19.3% |
D3
medium
residues 32-92
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 51.8 | 8.60e-14 | 100.0% | 13.2% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.52 | 26.0 | 3.00e-01 | 70.5% | 62.8% |
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 27.0 | 2.84e-01 | 90.2% | 46.3% |
D4
medium
residues 211-251_308-377
Domain cluster:
rep: hypothetical_protein__YP_009337242__Hubei_virga-like_virus_11__1923326__D790-809_821-831_888-944
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 79.3 | 3.90e-22 | 63.1% | 15.4% |
| PF00978.27 | RdRP_2 | 27.1 | 2.80e-06 | 36.9% | 8.4% |