←Back to structures

RNA_polymerase

Euk-Vir

NY_014_poxvirus

RNA_polymerase__YP_009408476__NY_014_poxvirus__2025360

Identity

Accession:
YP_009408476 ↗
Protein ID:
RNA_polymerase
Kingdom:
euk

Quality

88.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› NY_014_poxvirus

TaxID: 2025360

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: rep: putative_RNA_polymerase_subunit_RPO22__YP_009112793__Parapoxvirus_red_deer_HL953__1579460__D3-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05273.20 best Pox_RNA_Pol_22 170.7 4.20e-50 100.0% 52.7%
D2 high residues 112-181
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05273.20 best Pox_RNA_Pol_22 98.7 5.30e-28 100.0% 38.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 38.0 3.38e-01 100.0% 43.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 28.0 2.51e-01 100.0% 28.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.54 34.0 3.85e-01 100.0% 86.0%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 37.0 3.16e-01 100.0% 47.2%
4l8nA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 33.0 3.04e-01 100.0% 50.0%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 30.0 2.91e-01 98.6% 50.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4797890 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.83 37.0 3.45e-01 100.0% 35.3%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.82 70.0 6.79e-01 100.0% 84.2%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.79 67.0 6.66e-01 100.0% 87.7%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.79 67.0 6.63e-01 100.0% 86.5%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.78 67.0 6.53e-01 100.0% 85.3%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.77 64.0 6.45e-01 97.1% 88.6%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.77 65.0 6.52e-01 100.0% 91.4%
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.76 64.0 6.44e-01 100.0% 90.1%
5044392 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 32.0 3.62e-01 100.0% 50.9%
5044394 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 32.0 3.85e-01 100.0% 62.2%
4867166 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 30.0 3.73e-01 100.0% 76.3%
3994360 11.1.1.550 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 0.57 42.0 3.68e-01 77.1% 96.0%
3878278 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 2.86e-01 100.0% 32.7%
2595012 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.54 32.0 3.22e-01 87.1% 56.9%
3717592 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.53 39.0 2.42e-01 78.6% 84.7%
5078728 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 46.0 3.77e-01 100.0% 65.4%
5036173 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 38.0 2.74e-01 80.0% 84.8%