RNA_polymerase

Euk-Vir

NY_014_poxvirus

RNA_polymerase__YP_009408529__NY_014_poxvirus__2025360

Identity

93.3 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› NY_014_poxvirus

TaxID: 2025360

View cluster (30 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-10_203-301

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03396.22 best	Pox_RNA_pol_35	119.5	2.60e-34	90.6%	31.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yf2A02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.55	42.0	4.24e-01	92.5%	80.4%
1fxkC00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	45.0	4.26e-01	92.5%	78.2%
2zdiC00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	45.0	4.06e-01	92.5%	70.9%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3409714	604.3.1.1 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG	0.65	36.0	3.73e-01	92.5%	58.0%
3611420	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.55	46.0	4.37e-01	92.5%	87.7%
4570427	3281.1.1.5 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Oxidored_q5_N	0.54	47.0	3.12e-01	99.1%	61.2%
3734775	192.29.1.174 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF28510	0.53	42.0	3.46e-01	86.9%	93.2%
3960496	563.1.1.0 ↗	alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase	0.50	39.0	4.06e-01	87.9%	89.0%
3849550	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.50	43.0	3.39e-01	92.5%	48.8%

D2 high residues 30-180

PDB

Domain cluster: rep: RNA_polymerase_RPO35__YP_008004474__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D40-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03396.22 best	Pox_RNA_pol_35	238.9	1.10e-70	100.0%	51.4%