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RNA_polymerase

Euk-Vir

Sea_otter_poxvirus

RNA_polymerase__YP_009480632__Sea_otter_poxvirus__1416741

Identity

Accession:
YP_009480632 ↗
Protein ID:
RNA_polymerase
Kingdom:
euk

Quality

72.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Mustelpoxvirus› Sea_otter_poxvirus

TaxID: 1416741

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-166
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05320.18 best Pox_RNA_Pol_19 132.4 2.30e-38 100.0% 49.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zs9F01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.82 60.0 5.55e-01 75.6% 63.0%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 39.0 3.25e-01 97.6% 33.3%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 34.0 3.46e-01 97.6% 53.7%
2vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.58 51.0 4.17e-01 100.0% 70.0%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 40.0 3.44e-01 100.0% 45.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.10e-01 100.0% 67.3%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.35e-01 100.0% 95.1%
4k90A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 38.0 2.98e-01 70.7% 55.3%
5b2nA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 44.0 3.08e-01 84.1% 48.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.99e-01 100.0% 77.6%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 4.37e-01 100.0% 95.4%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.04e-01 100.0% 82.1%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.27e-01 100.0% 47.3%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.53 45.0 3.76e-01 100.0% 65.4%
3lvuB00 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 38.0 2.73e-01 79.3% 46.7%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 41.0 3.86e-01 89.0% 69.6%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.52 42.0 3.54e-01 93.9% 96.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.88e-01 100.0% 72.3%
2imfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.04e-01 98.8% 35.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942049 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.80 60.0 6.30e-01 79.3% 88.0%
4957054 101.1.2.743 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28795 0.70 37.0 4.28e-01 97.6% 71.2%
4945311 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 38.0 3.43e-01 97.6% 39.1%
3945830 101.1.2.153 ↗ alpha arrays › HTH › HTH › winged helix domain › EutK_C 0.67 38.0 4.17e-01 97.6% 69.2%
4990239 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.61 40.0 4.17e-01 100.0% 73.3%
3250042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 35.0 3.66e-01 100.0% 61.3%
5067261 101.1.2.242 ↗ alpha arrays › HTH › HTH › winged helix domain › RepL 0.58 41.0 4.24e-01 98.8% 76.2%
3388073 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.33e-01 100.0% 81.3%
5046862 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 39.0 4.18e-01 100.0% 82.9%
2578 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.56 39.0 4.08e-01 100.0% 78.7%
3279667 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.56 38.0 4.20e-01 100.0% 89.2%
5072661 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 4.13e-01 100.0% 78.8%
4992317 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.45e-01 74.4% 86.4%
4991639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.87e-01 100.0% 72.5%
5017632 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.55 39.0 4.25e-01 100.0% 93.8%
4952680 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.16e-01 100.0% 85.3%
3597578 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.54 44.0 3.11e-01 97.6% 63.7%
3986601 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.53 38.0 3.89e-01 100.0% 77.5%
3580090 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.53 39.0 3.46e-01 80.5% 80.8%
3923520 3289.1.1.2 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nckap1 0.53 46.0 2.58e-01 98.8% 15.1%
5014337 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.58e-01 96.3% 65.6%
3279376 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.51 39.0 3.73e-01 100.0% 70.5%
3961632 620.1.1.5 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N 0.51 43.0 3.60e-01 97.6% 54.8%
3904232 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.51 39.0 3.70e-01 100.0% 69.0%
4160593 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.50 35.0 2.80e-01 87.8% 35.8%
4024528 101.1.2.252 ↗ alpha arrays › HTH › HTH › winged helix domain › OHA 0.50 43.0 4.03e-01 100.0% 80.0%
3960101 620.1.1.0 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.50 42.0 3.77e-01 97.6% 65.2%