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RNA_polymerase_beta_subunit

Euk-Vir

Lymphocystis_disease_virus_4

RNA_polymerase_beta_subunit__YP_010087885__Lymphocystis_disease_virus_4__2704413

Identity

Accession:: YP_010087885 ↗
Protein ID:: RNA_polymerase_beta_subunit
Kingdom:: euk

Quality

78.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-126_302-369

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_B__YP_009021104__Anopheles_minimus_iridovirus__1465751__D26-169_366-478

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04563.21 best	RNA_pol_Rpb2_1	78.4	8.00e-22	88.6%	97.0%

D2 high residues 444-546

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04566.19 best	RNA_pol_Rpb2_4	39.9	5.00e-10	58.2%	96.8%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3q6bA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.59	37.0	4.24e-01	70.9%	87.8%
6wimA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.58	36.0	4.18e-01	87.4%	87.8%
6j09A02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.57	38.0	4.22e-01	74.8%	89.7%
5uayA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.57	39.0	4.27e-01	70.9%	89.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1511443	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.89	62.0	6.73e-01	71.8%	96.6%
4948672	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.84	69.0	6.07e-01	85.4%	87.4%
4956726	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.83	58.0	6.40e-01	71.8%	98.8%
4932691	4961.1.1.0 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit	0.75	53.0	5.83e-01	73.8%	98.8%

D3 high residues 663-779

PDB

Domain cluster: rep: putative_RNA_polymerase_beta_subunit__YP_009052296__Aureococcus_anophagefferens_virus__1474867__D765-873

D4 medium residues 132-290

PDB

Domain cluster: rep: RNA_polymerase_beta_subunit__YP_009342128__Lymphocystis_disease_virus_Sa__1898060__D129-284

D5 medium residues 588-662_780-791

PDB

Domain cluster: rep: 116R__NP_938371__Yaba_monkey_tumor_virus__38804__D710-743_760-781_873-892

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	58.3	1.10e-15	92.0%	19.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2j43A01	2.60.40.1110	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	28.0	2.74e-01	81.6%	44.6%

D6 medium residues 792-929

PDB

Domain cluster: rep: LC779065.1__BES79950.1__X__00177__D663-844

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	179.0	2.20e-52	100.0%	37.3%

D7 medium residues 930-1013

PDB