←Back to structures
RNA_polymerase_nsP4
Euk-VirEverglades_virus
RNA_polymerase_nsP4__YP_009509017__Everglades_virus__2083198
Identity
- Accession:
- YP_009509017 ↗
- Protein ID:
- RNA_polymerase_nsP4
- Kingdom:
- euk
Quality
79.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Togaviridae›
Alphavirus›
Everglades_virus
TaxID: 2083198
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-98_242-270
D2
medium
residues 99-144_175-190_340-364_502-607
Domain cluster:
rep: hypothetical_protein__YP_009337242__Hubei_virga-like_virus_11__1923326__D570-604_623-662_810-820_945-1065
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 68.5 | 7.50e-19 | 62.7% | 22.9% |
D3
medium
residues 161-174_191-209_271-339_379-435
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 59.6 | 3.80e-16 | 45.3% | 15.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pggA01 | 3.90.1730.10 | Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain | 0.67 | 60.0 | 4.61e-01 | 95.6% | 95.9% |
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.63 | 52.0 | 5.06e-01 | 86.8% | 100.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3691350 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.75 | 63.0 | 5.24e-01 | 89.3% | 93.0% |
| 3241316 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 63.0 | 4.89e-01 | 91.2% | 71.6% |
| 3273928 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 62.0 | 4.20e-01 | 91.2% | 49.1% |
| 3983816 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 56.0 | 4.72e-01 | 79.2% | 63.2% |
| 3997418 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.73 | 63.0 | 4.91e-01 | 93.1% | 66.6% |
| 3265091 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.72 | 62.0 | 4.18e-01 | 91.2% | 48.3% |
| 3258406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 61.0 | 4.12e-01 | 91.2% | 48.8% |
| 3451410 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 60.0 | 4.28e-01 | 92.5% | 58.3% |
| 3454701 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.69 | 52.0 | 4.25e-01 | 76.7% | 59.3% |
| None | — | 0.69 | 53.0 | 4.03e-01 | 79.2% | 63.9% | |
| 4456383 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.66 | 51.0 | 4.08e-01 | 79.2% | 61.2% |
| 4296494 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 50.0 | 3.98e-01 | 100.0% | 61.0% |
D4
medium
residues 210-241_365-378_436-501
Domain cluster:
rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 54.9 | 9.80e-15 | 57.1% | 13.6% |