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RNA_polymerase_rbpN_10
Euk-VirPandoravirus_macleodensis
RNA_polymerase_rbpN_10__YP_009481104__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481104 ↗
- Protein ID:
- RNA_polymerase_rbpN_10
- Kingdom:
- euk
Quality
68.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-72
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01194.23 best | RNA_pol_N | 60.4 | 2.10e-16 | 84.7% | 98.3% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 40.0 | 4.80e-01 | 76.4% | 91.1% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 40.0 | 4.00e-01 | 83.3% | 64.0% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.61 | 41.0 | 3.75e-01 | 77.8% | 52.1% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 40.0 | 4.47e-01 | 80.6% | 94.5% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 42.0 | 3.59e-01 | 84.7% | 98.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3641924 | 101.4.1.1 ↗ | alpha arrays › HTH › RPB10 › RPB10 › RNA_pol_N | 0.93 | 79.0 | 8.29e-01 | 94.4% | 98.5% |
| 4929164 | 101.4.1.1 ↗ | alpha arrays › HTH › RPB10 › RPB10 › RNA_pol_N | 0.90 | 81.0 | 8.04e-01 | 100.0% | 92.0% |
| 5072435 | 101.4.1.0 ↗ | alpha arrays › HTH › RPB10 › RPB10 | 0.89 | 75.0 | 7.83e-01 | 95.8% | 98.5% |
| 3879118 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.68 | 42.0 | 4.71e-01 | 76.4% | 81.8% |
| 3640035 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 44.0 | 4.16e-01 | 73.6% | 56.5% |
| 3920862 | 101.1.1.221 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCDC106 | 0.65 | 42.0 | 4.92e-01 | 77.8% | 96.0% |
| 5021717 | 101.1.1.562 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28505 | 0.63 | 46.0 | 3.76e-01 | 76.4% | 100.0% |
| 4602544 | 138.1.1.9 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C | 0.62 | 50.0 | 4.14e-01 | 87.5% | 96.0% |
| 3857628 | 101.1.3.29 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N | 0.59 | 39.0 | 4.11e-01 | 75.0% | 75.4% |
| 3983783 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.59 | 46.0 | 4.25e-01 | 87.5% | 70.5% |
| 3913655 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.58 | 46.0 | 4.55e-01 | 91.7% | 82.5% |
| 3759371 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 47.0 | 4.44e-01 | 93.1% | 76.4% |
| 4970998 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.54 | 45.0 | 4.05e-01 | 91.7% | 88.0% |