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RNA_polymerase_subunit_1

Euk-Vir

African_swine_fever_virus

RNA_polymerase_subunit_1__YP_009702346__African_swine_fever_virus__10497

Identity

Accession:
YP_009702346 ↗
Protein ID:
RNA_polymerase_subunit_1
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-84_196-277
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04997.18 best RNA_pol_Rpb1_1 51.6 1.30e-13 48.1% 24.0%
D2 high residues 88-192
PDB
Domain cluster: rep: DNA-dependent_RNA_polymerase_a_subunit__YP_009342229__Lymphocystis_disease_virus_Sa__1898060__D73-154
D3 high residues 322-348_409-486
PDB
Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00623.26 best RNA_pol_Rpb1_2 104.8 8.60e-30 71.4% 43.4%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.97 90.0 9.18e-01 100.0% 99.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.93 90.0 7.92e-01 100.0% 87.3%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.90 85.0 7.50e-01 99.0% 97.9%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.86 67.0 7.07e-01 87.6% 88.5%
1cr5A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.84 60.0 6.93e-01 82.9% 100.0%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.83 63.0 7.03e-01 88.6% 98.8%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.83 64.0 7.12e-01 87.6% 100.0%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.83 54.0 5.78e-01 71.4% 75.8%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.83 66.0 7.00e-01 89.5% 94.6%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.81 62.0 6.25e-01 85.7% 79.2%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.81 60.0 6.72e-01 82.9% 98.8%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.80 49.0 6.16e-01 83.8% 100.0%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.78 64.0 6.49e-01 86.7% 96.1%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 58.0 6.06e-01 79.0% 100.0%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 59.0 5.74e-01 81.0% 100.0%
1y5lA02 3.40.50.12440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.74 66.0 3.65e-01 94.3% 12.6%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 62.0 6.13e-01 89.5% 95.4%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 59.0 5.98e-01 85.7% 99.0%
1n10A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 57.0 5.59e-01 82.9% 96.5%
1ogyA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.73 56.0 5.34e-01 81.0% 94.3%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.72 57.0 6.00e-01 82.9% 100.0%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.72 62.0 5.36e-01 93.3% 83.6%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.72 57.0 5.85e-01 82.9% 100.0%
1q16A13 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.71 63.0 5.55e-01 94.3% 82.0%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.71 66.0 6.19e-01 100.0% 94.4%
1ti2A04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.69 61.0 5.33e-01 95.2% 92.9%
1dmrA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.69 63.0 5.41e-01 99.0% 85.3%
7xc8A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.69 57.0 5.58e-01 88.6% 100.0%
1hd5A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.65 55.0 4.40e-01 91.4% 100.0%
2pvpA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 39.0 4.82e-01 82.9% 98.4%
4dk0A02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 51.0 5.45e-01 84.8% 97.8%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 39.0 4.71e-01 82.9% 97.1%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.62 46.0 5.02e-01 88.6% 97.6%
2i87A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 40.0 4.62e-01 87.6% 95.9%
3orqA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 36.0 4.40e-01 82.9% 98.4%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 42.0 3.97e-01 95.2% 62.9%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 42.0 4.62e-01 84.8% 97.6%
3nutB02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 40.0 3.74e-01 96.2% 60.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 4.15e-01 86.7% 90.9%
2dsiA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 46.0 4.13e-01 99.0% 63.6%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 32.0 3.34e-01 85.7% 64.5%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 40.0 4.25e-01 97.1% 96.6%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 41.0 3.42e-01 84.8% 78.7%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.87e-01 88.6% 85.7%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.51 34.0 3.39e-01 84.8% 63.4%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.66e-01 88.6% 83.0%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 34.0 3.18e-01 85.7% 55.3%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 93.0 7.19e-01 100.0% 88.5%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 92.0 8.71e-01 100.0% 86.7%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 92.0 7.21e-01 100.0% 91.3%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 91.0 8.48e-01 100.0% 83.2%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.95 92.0 7.19e-01 100.0% 93.8%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 92.0 7.38e-01 100.0% 87.2%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 87.0 8.41e-01 100.0% 87.0%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 92.0 7.05e-01 100.0% 87.8%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 92.0 7.99e-01 100.0% 84.1%
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.94 92.0 8.67e-01 100.0% 88.3%
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 92.0 6.15e-01 100.0% 50.6%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 92.0 7.28e-01 100.0% 89.2%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.94 91.0 7.07e-01 100.0% 85.0%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 91.0 7.19e-01 100.0% 89.5%
4809193 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 61.0 7.36e-01 71.4% 94.6%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.93 89.0 7.71e-01 100.0% 92.7%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.92 88.0 7.54e-01 100.0% 90.3%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.92 88.0 6.68e-01 100.0% 65.1%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 7.19e-01 100.0% 85.1%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.91 86.0 6.81e-01 100.0% 77.3%
4890084 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.90 84.0 7.92e-01 100.0% 83.6%
4990349 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.89 65.0 7.53e-01 81.9% 100.0%
5011232 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.87 64.0 7.28e-01 81.9% 98.8%
3486347 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.87 69.0 7.26e-01 89.5% 90.5%
3409396 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.87 69.0 6.93e-01 89.5% 81.9%
5045002 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.87 66.0 7.16e-01 87.6% 92.2%
5074983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 69.0 7.40e-01 92.4% 96.7%
3706161 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 65.0 7.21e-01 90.5% 96.5%
4241168 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 64.0 7.30e-01 80.0% 100.0%
4970875 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 67.0 7.39e-01 87.6% 100.0%
5037727 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 67.0 7.43e-01 89.5% 100.0%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.86 77.0 7.17e-01 98.1% 79.0%
4607187 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 68.0 7.12e-01 83.8% 90.5%
2968637 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.85 80.0 6.72e-01 100.0% 89.8%
3602941 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.85 66.0 7.35e-01 89.5% 100.0%
5053172 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.85 65.0 7.15e-01 87.6% 97.6%
5077330 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.85 64.0 6.44e-01 81.9% 78.1%
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.85 67.0 6.94e-01 89.5% 87.0%
4200720 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.85 66.0 7.29e-01 88.6% 100.0%
4097451 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.84 65.0 7.20e-01 81.9% 98.8%
4995073 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.84 64.0 7.11e-01 79.0% 100.0%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 65.0 7.11e-01 89.5% 96.6%
5083684 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 58.0 6.85e-01 81.9% 100.0%
5053173 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 64.0 6.77e-01 84.8% 88.4%
4171290 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.84 65.0 7.21e-01 89.5% 100.0%
5053341 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.84 68.0 6.99e-01 88.6% 89.0%
4108919 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 65.0 7.19e-01 89.5% 100.0%
33 1.1.2.15 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N 0.83 63.0 7.03e-01 88.6% 98.8%
4977837 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 65.0 7.18e-01 87.6% 100.0%
5079577 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 61.0 6.92e-01 83.8% 100.0%
5001485 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.83 65.0 7.16e-01 88.6% 100.0%
5076554 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.83 61.0 6.87e-01 85.7% 100.0%
3186315 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 70.0 7.19e-01 88.6% 97.0%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 64.0 7.10e-01 86.7% 100.0%
5053174 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 63.0 6.76e-01 91.4% 93.3%
4991006 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 63.0 6.90e-01 89.5% 98.8%
3352481 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.82 69.0 6.09e-01 88.6% 86.2%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 68.0 7.02e-01 90.5% 92.0%
3696793 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 72.0 7.03e-01 95.2% 98.3%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.81 63.0 6.83e-01 88.6% 95.6%
3748306 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 67.0 7.10e-01 87.6% 98.9%
3514644 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.80 64.0 6.87e-01 90.5% 97.8%
3195760 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.79 61.0 6.59e-01 89.5% 93.3%
3684407 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.79 70.0 5.89e-01 93.3% 86.7%
3492328 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 58.0 6.60e-01 81.9% 100.0%
4243381 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.79 61.0 6.38e-01 81.9% 95.9%
5005268 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 64.0 6.53e-01 85.7% 100.0%
3343851 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 73.0 5.56e-01 100.0% 77.2%
3646137 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 72.0 5.75e-01 100.0% 97.5%
3412967 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.78 63.0 6.81e-01 88.6% 100.0%
3842541 1.1.2.38 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_PEX6 0.77 66.0 6.54e-01 90.5% 100.0%
4280405 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.75e-01 87.6% 100.0%
5030460 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.77 73.0 4.54e-01 100.0% 35.9%
4498374 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.77 73.0 5.33e-01 100.0% 66.0%
3406944 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 64.0 5.75e-01 87.6% 70.7%
5060748 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 73.0 7.16e-01 100.0% 98.2%
3273202 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 66.0 6.81e-01 90.5% 96.0%
4961166 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.77 72.0 5.34e-01 100.0% 72.7%
5056546 3349.1.1.3 ↗ a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.77 72.0 4.55e-01 100.0% 36.8%
4027677 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 59.0 6.49e-01 82.9% 98.8%
4203264 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.76 61.0 6.38e-01 83.8% 100.0%
3824979 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 59.0 6.40e-01 86.7% 96.7%
3617423 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.75 64.0 6.75e-01 90.5% 100.0%
3789369 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 62.0 6.40e-01 87.6% 95.0%
3255733 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 63.0 6.44e-01 88.6% 100.0%
3722909 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.75 69.0 6.33e-01 100.0% 96.3%
3740727 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 57.0 6.25e-01 80.0% 100.0%
3218726 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 63.0 6.47e-01 90.5% 99.0%
4014411 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 61.0 6.45e-01 88.6% 96.8%
4270657 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.74 59.0 6.34e-01 88.6% 98.9%
2968642 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.74 61.0 5.75e-01 86.7% 82.8%
4131337 1.1.2.12 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC 0.73 57.0 5.83e-01 81.9% 86.0%
4441475 1.1.2.12 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC 0.72 56.0 5.78e-01 88.6% 87.0%
3948899 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.72 62.0 5.55e-01 92.4% 84.1%
3175987 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 66.0 5.21e-01 100.0% 74.8%
4871383 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.72 58.0 6.12e-01 85.7% 100.0%
4116299 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.72 59.0 6.23e-01 88.6% 100.0%
3343849 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 60.0 6.34e-01 92.4% 100.0%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.71 65.0 6.02e-01 100.0% 96.2%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 58.0 5.81e-01 90.5% 97.1%
D4 high residues 501-647
PDB
Domain cluster: rep: putative_DNA_directed_RNA_polymerase_largest_subunit__YP_009052394__Aureococcus_anophagefferens_virus__1474867__D487-612
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04983.24 best RNA_pol_Rpb1_3 92.2 4.50e-26 100.0% 84.6%
D5 high residues 659-821
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_147_kDa_polypeptide__YP_009329703__BeAn_58058_virus__67082__D598-725
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05000.23 best RNA_pol_Rpb1_4 57.1 2.10e-15 66.9% 92.5%
D6 high residues 1120-1260
PDB
Domain cluster: rep: NP1450L__YP_009703155__African_swine_fever_virus__10497__D1120-1260
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04990.18 best RNA_pol_Rpb1_7 30.2 5.80e-07 90.8% 78.7%
D7 medium residues 877-913
PDB
D8 medium residues 928-1034
PDB
D9 medium residues 1086-1119_1266-1317
PDB
Domain cluster: representative
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 61.0 5.70e-01 100.0% 81.9%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 58.0 5.53e-01 100.0% 82.4%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 59.0 5.47e-01 98.8% 82.2%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 58.0 5.45e-01 100.0% 81.1%
4dzdA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.65 47.0 5.07e-01 94.2% 94.3%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 57.0 5.34e-01 100.0% 82.2%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 57.0 5.37e-01 100.0% 82.5%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.64 56.0 5.27e-01 96.5% 97.1%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 5.16e-01 100.0% 89.9%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 55.0 5.16e-01 100.0% 83.2%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.62 54.0 5.19e-01 97.7% 85.9%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 45.0 4.44e-01 89.5% 70.5%
2zomA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 4.99e-01 100.0% 83.2%
1ucnA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.61 53.0 4.44e-01 98.8% 83.4%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 5.00e-01 97.7% 89.9%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 51.0 5.01e-01 94.2% 96.8%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 5.00e-01 100.0% 91.9%
1iq4A00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.59 51.0 4.13e-01 100.0% 86.0%
3iabB01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 42.0 4.07e-01 75.6% 65.7%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.58e-01 91.9% 92.2%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.69e-01 91.9% 96.8%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 50.0 4.79e-01 100.0% 82.7%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 50.0 4.81e-01 98.8% 86.7%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 4.51e-01 94.2% 88.3%
3qjlA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.42e-01 95.3% 95.0%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 40.0 2.90e-01 70.9% 85.1%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.75e-01 91.9% 98.9%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 41.0 4.09e-01 76.7% 73.1%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.74e-01 100.0% 96.1%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.57e-01 94.2% 96.0%
3nwgA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.57 46.0 4.42e-01 96.5% 77.2%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 47.0 3.54e-01 93.0% 91.0%
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.57 49.0 4.53e-01 100.0% 94.6%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.57 47.0 3.97e-01 94.2% 62.5%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 49.0 4.50e-01 97.7% 88.4%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 45.0 4.05e-01 87.2% 82.5%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 49.0 4.86e-01 98.8% 94.6%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.62e-01 94.2% 94.7%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 36.0 3.01e-01 72.1% 35.8%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 49.0 4.72e-01 100.0% 94.9%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 2.96e-01 72.1% 85.4%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.00e-01 91.9% 79.9%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.61e-01 100.0% 89.9%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 44.0 4.55e-01 94.2% 100.0%
1u0sA00 3.30.70.1110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Histidine kinase CheA-like, P2 response regulator-binding domain 0.55 47.0 4.78e-01 98.8% 97.7%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.66e-01 100.0% 93.7%
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 35.0 3.71e-01 95.3% 74.0%
3j7yU00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 39.0 3.65e-01 76.7% 65.8%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 46.0 4.51e-01 98.8% 87.4%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 47.0 4.53e-01 100.0% 94.0%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 46.0 4.52e-01 98.8% 94.7%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 46.0 4.00e-01 100.0% 84.5%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.53 39.0 3.28e-01 76.7% 77.1%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.99e-01 93.0% 100.0%
2ii3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 3.23e-01 90.7% 88.8%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 4.31e-01 100.0% 98.1%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 2.85e-01 86.0% 72.6%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.97e-01 95.3% 97.5%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 4.02e-01 94.2% 77.6%
3ggdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 2.74e-01 74.4% 79.4%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 38.0 3.56e-01 77.9% 99.1%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 39.0 2.81e-01 84.9% 71.3%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 2.88e-01 86.0% 71.9%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 37.0 3.12e-01 75.6% 94.0%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.89e-01 72.1% 87.4%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.87e-01 93.0% 99.1%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.84e-01 93.0% 99.1%
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.17e-01 90.7% 61.6%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.82e-01 70.9% 86.6%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 39.0 2.81e-01 86.0% 70.5%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 37.0 3.23e-01 77.9% 69.4%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052110 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.87 72.0 7.68e-01 100.0% 98.7%
5055453 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.86 72.0 7.74e-01 100.0% 100.0%
4037293 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.85 71.0 7.64e-01 100.0% 100.0%
4022101 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.84 77.0 7.40e-01 96.5% 100.0%
4047137 4956.1.1.1 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.83 73.0 7.55e-01 100.0% 98.8%
3711494 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.82 75.0 7.26e-01 96.5% 98.9%
5070514 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.81 67.0 4.60e-01 100.0% 29.6%
3921582 4956.1.1.1 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.81 76.0 7.31e-01 100.0% 96.8%
3939269 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.80 75.0 7.26e-01 100.0% 98.9%
4444494 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.79 75.0 7.21e-01 100.0% 98.9%
3829296 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.76 70.0 7.09e-01 100.0% 98.8%
5037829 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.69 62.0 5.90e-01 98.8% 86.0%
4140821 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.68 62.0 5.77e-01 100.0% 81.9%
5000967 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.67 59.0 5.58e-01 97.7% 82.9%
4937786 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.67 59.0 5.66e-01 100.0% 84.0%
3288140 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.66 57.0 5.10e-01 95.3% 78.3%
3166912 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 4.54e-01 100.0% 86.3%
4957224 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.66 58.0 5.55e-01 100.0% 84.0%
4629521 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.66 59.0 5.53e-01 98.8% 81.7%
4944847 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.66 60.0 5.60e-01 100.0% 82.7%
3972988 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.66 56.0 5.35e-01 93.0% 100.0%
5015958 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.64 58.0 5.47e-01 100.0% 82.7%
5040667 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.64 57.0 5.39e-01 100.0% 82.5%
4255094 304.28.1.35 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless 0.64 55.0 5.14e-01 96.5% 97.3%
3991844 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 57.0 5.49e-01 100.0% 100.0%
4988658 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.64 47.0 3.87e-01 77.9% 75.6%
3269973 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 53.0 5.19e-01 94.2% 95.8%
5043596 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.62 53.0 4.85e-01 94.2% 84.3%
3999424 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 55.0 5.15e-01 100.0% 80.0%
4943559 304.16.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.62 55.0 5.48e-01 98.8% 95.5%
3295182 11.1.1.808 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7036 0.62 51.0 4.58e-01 93.0% 84.8%
4172769 304.9.1.68 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PRE_C2HC 0.61 51.0 5.21e-01 95.3% 100.0%
4970138 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.61 50.0 4.78e-01 93.0% 97.1%
2093009 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.61 51.0 4.97e-01 94.2% 96.9%
3943661 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.61 51.0 4.87e-01 94.2% 98.0%
3702503 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.61 51.0 5.12e-01 96.5% 100.0%
3698177 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 52.0 4.83e-01 100.0% 81.7%
4028722 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.60 52.0 4.69e-01 100.0% 98.4%
3784198 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 49.0 4.68e-01 93.0% 99.0%
3475490 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.60 53.0 4.64e-01 100.0% 98.5%
3823835 304.4.1.78 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7036 0.60 51.0 4.78e-01 95.3% 100.0%
2793923 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.59 51.0 3.66e-01 100.0% 32.4%
3956965 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 49.0 3.99e-01 93.0% 50.3%
3924669 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 49.0 4.80e-01 94.2% 95.8%
4542034 304.45.1.1 ↗ a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.58 51.0 4.39e-01 98.8% 72.9%
4487061 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.58 42.0 3.42e-01 76.7% 64.7%
3664706 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 49.0 4.95e-01 96.5% 95.3%
3225950 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 49.0 4.44e-01 98.8% 69.2%
4119917 882.1.1.2 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal_L5,Ribosomal_L5_C 0.58 50.0 3.97e-01 100.0% 82.0%
3267305 304.45.1.1 ↗ a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.58 51.0 4.05e-01 98.8% 55.4%
3968511 304.45.1.1 ↗ a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.58 51.0 4.05e-01 98.8% 54.9%
3949585 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 45.0 4.17e-01 95.3% 64.3%
3721754 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 48.0 4.37e-01 95.3% 82.5%
3735140 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.56 47.0 3.45e-01 97.7% 31.9%
3188885 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.56 45.0 3.34e-01 91.9% 87.8%
4182477 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.56 44.0 4.27e-01 87.2% 77.0%
3626286 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.55 39.0 3.35e-01 73.3% 80.0%
3960033 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 40.0 3.29e-01 77.9% 59.4%
1935959 5090.1.1.1 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.55 36.0 3.55e-01 75.6% 59.8%
4997598 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 48.0 4.40e-01 97.7% 98.3%
3579336 304.5.1.23 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.55 47.0 4.41e-01 98.8% 79.1%
5060858 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 42.0 2.79e-01 84.9% 36.3%
5030848 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 46.0 3.95e-01 97.7% 86.9%
3835251 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 39.0 3.79e-01 76.7% 72.6%
3950094 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 44.0 3.11e-01 93.0% 68.9%
3839422 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 42.0 4.10e-01 89.5% 78.5%
4940944 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 48.0 4.21e-01 98.8% 90.4%
5022277 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 46.0 4.05e-01 97.7% 90.0%
5037411 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.53 46.0 4.46e-01 100.0% 88.0%
4948199 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.53 37.0 3.59e-01 72.1% 66.3%
3603683 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 45.0 3.85e-01 96.5% 82.1%
3417210 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.53 45.0 4.48e-01 100.0% 95.6%
3271482 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 41.0 3.10e-01 87.2% 87.5%
5012279 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.53 42.0 3.69e-01 89.5% 99.3%
3638463 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 40.0 3.00e-01 88.4% 78.5%
3758929 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.52 36.0 3.23e-01 73.3% 78.5%
4961350 242.1.1.10 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 0.51 38.0 3.82e-01 90.7% 76.7%
4474382 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 42.0 3.78e-01 93.0% 66.4%
4943808 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 44.0 3.74e-01 100.0% 84.7%
3834940 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 36.0 2.29e-01 77.9% 89.4%
4957499 223.1.1.192 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7287 0.50 43.0 3.70e-01 94.2% 95.5%