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RNA_polymerase_subunit_30
Euk-VirFlamingopox_virus_FGPVKD09
RNA_polymerase_subunit_30__YP_009448019__Flamingopox_virus_FGPVKD09__2059380
Identity
- Accession:
- YP_009448019 ↗
- Protein ID:
- RNA_polymerase_subunit_30
- Kingdom:
- euk
Quality
78.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-118
Domain cluster:
rep: transcription_factor_S-II_-TFIIS-_E4L__YP_009162443__Salmon_gill_poxvirus__1680908__D10-135
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12410.15 best | rpo30_N | 184.2 | 1.40e-54 | 100.0% | 85.2% |
D2
medium
residues 124-174
Domain cluster:
rep: putative_transcription_elongation_factor_S-II-related_protein__YP_009507517__Heterosigma_akashiwo_virus_01__97195__D153-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01096.24 best | Zn_ribbon_TFIIS | 52.5 | 4.60e-14 | 74.5% | 97.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.73 | 59.0 | 5.15e-01 | 92.2% | 59.2% |
| 6gmhI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.72 | 59.0 | 5.38e-01 | 92.2% | 69.6% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 53.0 | 5.15e-01 | 88.2% | 75.4% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 55.0 | 4.91e-01 | 90.2% | 60.8% |
| 3p5jB01 | 2.20.25.530 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 45.0 | 4.00e-01 | 74.5% | 52.7% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.62 | 46.0 | 4.76e-01 | 82.4% | 85.4% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.62 | 38.0 | 2.92e-01 | 82.4% | 25.0% |
| 3vxvA00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.61 | 40.0 | 3.73e-01 | 82.4% | 53.8% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 40.0 | 3.15e-01 | 84.3% | 29.3% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 37.0 | 3.30e-01 | 70.6% | 40.0% |
| 1cp9B02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.56 | 39.0 | 3.60e-01 | 76.5% | 57.5% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 39.0 | 3.62e-01 | 74.5% | 65.7% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 40.0 | 3.25e-01 | 90.2% | 39.4% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 2.94e-01 | 76.5% | 70.4% |
| 3kyaA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 42.0 | 2.68e-01 | 98.0% | 71.4% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 40.0 | 3.48e-01 | 88.2% | 58.7% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.01e-01 | 76.5% | 58.7% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.53 | 35.0 | 3.51e-01 | 70.6% | 100.0% |
| 1mo9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 37.0 | 2.82e-01 | 78.4% | 43.0% |
| 3dsmA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.73e-01 | 100.0% | 51.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.59e-01 | 88.2% | 73.6% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 2.47e-01 | 86.3% | 27.7% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.51 | 38.0 | 3.42e-01 | 80.4% | 81.7% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.63e-01 | 88.2% | 77.4% |
| 4hljA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 2.81e-01 | 72.5% | 81.2% |
| 2wacA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 39.0 | 3.00e-01 | 88.2% | 61.9% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 63.0 | 5.91e-01 | 76.5% | 91.7% |
| 4998373 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.82 | 60.0 | 6.15e-01 | 78.4% | 84.0% |
| 5048721 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.81 | 67.0 | 6.22e-01 | 92.2% | 72.3% |
| 5054449 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.79 | 65.0 | 5.87e-01 | 92.2% | 66.7% |
| 3702281 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.79 | 53.0 | 5.21e-01 | 74.5% | 65.5% |
| 5028865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 62.0 | 6.27e-01 | 90.2% | 88.0% |
| 3495913 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 60.0 | 5.72e-01 | 88.2% | 71.7% |
| 4937130 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.78 | 59.0 | 5.53e-01 | 88.2% | 66.2% |
| 3755722 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.76 | 58.0 | 4.02e-01 | 88.2% | 24.6% |
| 3948622 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 55.0 | 5.78e-01 | 76.5% | 86.7% |
| 5038934 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.75 | 60.0 | 5.77e-01 | 92.2% | 77.6% |
| 345409 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.74 | 60.0 | 5.29e-01 | 92.2% | 61.6% |
| 2754621 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.74 | 60.0 | 5.55e-01 | 90.2% | 72.7% |
| 3713467 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 61.0 | 5.46e-01 | 90.2% | 68.6% |
| 3346241 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.74 | 45.0 | 4.58e-01 | 76.5% | 62.0% |
| 3811724 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.73 | 46.0 | 4.48e-01 | 76.5% | 56.9% |
| 4485357 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.73 | 58.0 | 5.44e-01 | 92.2% | 71.4% |
| 4013714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 57.0 | 5.85e-01 | 90.2% | 93.8% |
| 3804890 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.72 | 57.0 | 5.52e-01 | 92.2% | 78.0% |
| 3816604 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.72 | 54.0 | 5.07e-01 | 90.2% | 66.2% |
| 3445009 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.71 | 56.0 | 3.88e-01 | 90.2% | 25.1% |
| 3598298 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 56.0 | 5.35e-01 | 88.2% | 76.7% |
| 4968137 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 48.0 | 4.73e-01 | 70.6% | 65.5% |
| 3309343 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 57.0 | 5.57e-01 | 92.2% | 83.6% |
| 2800345 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 54.0 | 5.13e-01 | 88.2% | 69.4% |
| 3418511 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.71 | 47.0 | 4.77e-01 | 78.4% | 70.0% |
| 3487047 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 59.0 | 5.60e-01 | 92.2% | 80.0% |
| 3621358 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.70 | 56.0 | 5.24e-01 | 90.2% | 70.8% |
| 3737071 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.70 | 54.0 | 5.20e-01 | 88.2% | 74.6% |
| 4945758 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 54.0 | 4.94e-01 | 90.2% | 64.3% |
| 4664970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 50.0 | 5.29e-01 | 74.5% | 84.4% |
| 4028184 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.69 | 57.0 | 5.16e-01 | 92.2% | 68.6% |
| 5000727 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 52.0 | 5.12e-01 | 82.4% | 80.0% |
| 3199611 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.69 | 59.0 | 5.55e-01 | 100.0% | 79.7% |
| 4997648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.69 | 50.0 | 5.08e-01 | 78.4% | 82.0% |
| 3263635 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 54.0 | 5.06e-01 | 88.2% | 69.2% |
| 3704822 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 54.0 | 3.77e-01 | 88.2% | 26.4% |
| 4680459 | 375.1.1.67 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N | 0.68 | 48.0 | 5.17e-01 | 74.5% | 84.4% |
| 5035584 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.68 | 49.0 | 4.30e-01 | 78.4% | 73.8% |
| 4963635 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.68 | 53.0 | 4.88e-01 | 92.2% | 65.2% |
| 4964575 | 375.1.1.346 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7838 | 0.67 | 47.0 | 5.03e-01 | 78.4% | 95.0% |
| 3705742 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.67 | 51.0 | 4.97e-01 | 88.2% | 75.9% |
| 3213181 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 47.0 | 4.74e-01 | 78.4% | 96.0% |
| 3645101 | 375.1.1.80 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof | 0.66 | 55.0 | 5.61e-01 | 94.1% | 94.0% |
| 4882787 | 375.1.1.67 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N | 0.65 | 46.0 | 4.81e-01 | 74.5% | 80.9% |
| 3204334 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.65 | 45.0 | 4.58e-01 | 76.5% | 76.0% |
| 4970648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.63 | 47.0 | 4.75e-01 | 80.4% | 84.0% |
| 4990926 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.63 | 46.0 | 4.71e-01 | 80.4% | 84.0% |
| 4012778 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.61 | 42.0 | 4.59e-01 | 74.5% | 97.5% |
| 5030510 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 42.0 | 4.32e-01 | 74.5% | 76.0% |
| 3720866 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 41.0 | 3.89e-01 | 76.5% | 58.5% |
| 4861411 | 5.1.4.58 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 | 0.59 | 51.0 | 3.14e-01 | 100.0% | 53.3% |
| 3392590 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 37.0 | 3.63e-01 | 84.3% | 56.7% |
| 3965967 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 38.0 | 3.12e-01 | 88.2% | 36.0% |
| 4945816 | 375.1.1.333 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › jr-ZPR1 | 0.55 | 41.0 | 4.13e-01 | 88.2% | 85.5% |
| 3679899 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.55 | 39.0 | 3.47e-01 | 98.0% | 50.0% |
| 2796001 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.54 | 43.0 | 4.04e-01 | 92.2% | 76.9% |
| 3478046 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.54 | 41.0 | 2.85e-01 | 88.2% | 28.2% |
| 3234934 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 35.0 | 2.19e-01 | 88.2% | 11.6% |
| 3958939 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 40.0 | 2.66e-01 | 86.3% | 24.1% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 41.0 | 3.06e-01 | 94.1% | 87.3% |
| 2793138 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.52 | 35.0 | 3.33e-01 | 78.4% | 55.9% |
| 5029226 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.51 | 37.0 | 3.70e-01 | 86.3% | 81.8% |
| 4001761 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 41.0 | 3.08e-01 | 88.2% | 41.6% |
| 3990074 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.50 | 39.0 | 3.29e-01 | 96.1% | 84.8% |
| 3685475 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 35.0 | 3.15e-01 | 76.5% | 80.0% |