←Back to structures

RNA_polymerase_subunit_RP035

Euk-Vir

Turkeypox_virus

RNA_polymerase_subunit_RP035__YP_009177164__Turkeypox_virus__336486

Identity

Accession:: YP_009177164 ↗
Protein ID:: RNA_polymerase_subunit_RP035
Kingdom:: euk

Quality

89.5 mean pLDDT

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-60

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06015.18 best	Chordopox_A30L	67.0	1.40e-18	98.2%	73.2%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kp8A00	1.20.5.170	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.84	75.0	6.87e-01	100.0%	86.1%
3oo3A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.81	58.0	3.48e-01	76.4%	12.7%
2nwlC00	1.10.3860.10	Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter	0.80	71.0	4.19e-01	100.0%	35.2%
1j2jB00	1.20.5.170	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.79	54.0	6.03e-01	70.9%	95.1%
2iexA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.70	47.0	4.88e-01	78.2%	76.5%
2ouwB00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.63	55.0	4.00e-01	92.7%	43.4%
4b94A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	42.0	3.17e-01	76.4%	27.0%
7zb5E01	3.40.50.10810	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain	0.60	49.0	3.01e-01	87.3%	17.9%
4ffbC00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	50.0	3.34e-01	98.2%	85.3%
2ndpA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.50	40.0	3.34e-01	89.1%	53.5%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3891904	109.4.1.1608 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2, HEAT_MROH2B_1st	0.83	62.0	3.66e-01	80.0%	11.9%
3170639	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.82	73.0	6.34e-01	100.0%	65.9%
3522707	109.4.1.1608 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2, HEAT_MROH2B_1st	0.82	60.0	3.44e-01	80.0%	8.3%
3973453	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.82	66.0	5.80e-01	100.0%	60.0%
3964469	7023.1.1.0 ↗	alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein	0.82	64.0	4.90e-01	85.5%	40.0%
4024303	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.79	66.0	4.07e-01	98.2%	16.7%
3389690	174.1.1.29 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728	0.79	72.0	5.32e-01	100.0%	42.2%
3596592	5060.1.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C	0.77	60.0	4.81e-01	83.6%	46.7%
3368785	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.77	63.0	4.87e-01	89.1%	49.6%
3660543	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.76	42.0	2.96e-01	83.6%	19.4%
4086063	309.1.1.4 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C	0.74	53.0	3.61e-01	76.4%	22.7%
3503536	3711.1.1.38 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Patched	0.74	63.0	5.39e-01	98.2%	60.0%
3677530	109.4.1.357 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd	0.72	58.0	3.45e-01	89.1%	43.5%

D2 high residues 90-240

PDB

Domain cluster: rep: RNA_polymerase_RPO35__YP_008004474__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D40-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03396.22 best	Pox_RNA_pol_35	242.6	8.20e-72	100.0%	51.7%

D3 medium residues 67-89_246-285_345-364

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03396.22 best	Pox_RNA_pol_35	45.8	7.10e-12	77.1%	20.9%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hfiA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.66	52.0	4.49e-01	81.9%	67.5%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.63	51.0	4.62e-01	90.4%	65.5%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.61	53.0	4.80e-01	100.0%	93.1%
1ldjA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.60	51.0	4.55e-01	92.8%	67.8%
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.59	43.0	4.51e-01	92.8%	87.5%
3pe0A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	46.0	4.30e-01	86.7%	83.0%
1pq4A01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.55	41.0	3.38e-01	78.3%	48.0%
3euaA02	1.10.10.2240	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.55	33.0	3.72e-01	92.8%	76.6%
1lqsL01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.54	46.0	4.43e-01	100.0%	92.0%
6zxqA01	1.10.300.10	Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2	0.52	46.0	4.45e-01	100.0%	94.6%
3wgtA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.50	36.0	2.76e-01	74.7%	97.5%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3752593	3016.1.1.2 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3	0.69	48.0	5.40e-01	79.5%	100.0%
3331809	375.1.9.23 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Sterile	0.69	48.0	3.75e-01	72.3%	36.0%
54721	601.26.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like	0.66	52.0	4.49e-01	81.9%	67.5%
4124299	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.64	53.0	5.21e-01	90.4%	91.1%
3180887	174.1.1.9 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF1746	0.64	56.0	4.89e-01	100.0%	70.0%
3220580	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.60	53.0	4.49e-01	100.0%	87.1%
4183685	2002.1.1.120 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM	0.59	46.0	3.10e-01	84.3%	48.8%
3628698	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.59	48.0	4.26e-01	86.7%	88.7%
3714753	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.59	52.0	3.13e-01	98.8%	62.2%
4994613	140.1.1.0 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.58	44.0	3.58e-01	80.7%	80.0%
4948618	140.1.1.5 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1	0.58	48.0	3.55e-01	95.2%	36.4%
3601274	140.1.1.0 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	0.58	45.0	3.32e-01	90.4%	30.0%
4982330	3355.1.1.41 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DUF401	0.57	46.0	3.01e-01	91.6%	66.3%
4015	150.3.1.6 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL10	0.55	46.0	3.93e-01	98.8%	55.6%
4025008	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.54	43.0	4.13e-01	88.0%	84.2%
4547736	604.12.1.111 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27331	0.53	41.0	4.14e-01	84.3%	85.9%
5026592	7512.1.1.30 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4	0.52	47.0	3.54e-01	100.0%	63.1%
3244409	3914.1.1.0 ↗	alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain	0.50	38.0	3.30e-01	84.3%	59.3%

D4 medium residues 286-344

PDB

Domain cluster: rep: RNA_polymerase_subunit_RPO35__YP_227503__Deerpox_virus_W-848-83__305674__D227-282

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03396.22 best	Pox_RNA_pol_35	59.7	4.30e-16	100.0%	20.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m6nA00	2.20.25.20	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.58	34.0	3.85e-01	89.8%	76.1%
1a79A02	3.40.1170.20	Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain	0.58	42.0	4.03e-01	100.0%	67.6%
4tkcA00	2.90.10.10	Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain	0.53	40.0	3.36e-01	88.1%	83.9%
1xf1A05	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	36.0	3.11e-01	72.9%	72.3%
3r4cA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.51	38.0	3.36e-01	89.8%	84.2%
1r75A00	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.50	40.0	3.36e-01	91.5%	74.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5031671	242.2.1.2 ↗	a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N	0.56	42.0	4.00e-01	98.3%	68.0%
4645841	242.2.1.2 ↗	a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N	0.55	42.0	3.97e-01	98.3%	68.0%
4959202	331.10.2.0 ↗	a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase	0.55	40.0	3.52e-01	81.4%	78.9%
3190335	213.1.1.61 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › GNAT_LYC1-like	0.51	37.0	2.54e-01	83.1%	36.6%
3172120	2004.1.1.250 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd	0.51	38.0	2.29e-01	79.7%	73.3%