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RNA_polymerase_subunit_RPO132

Euk-Vir

Penguinpox_virus

RNA_polymerase_subunit_RPO132__YP_009046186__Penguinpox_virus__648998

Identity

Accession:
YP_009046186 ↗
Protein ID:
RNA_polymerase_subunit_RPO132
Kingdom:
euk

Quality

80.8 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-17_578-660
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_2__YP_004346997__Lausannevirus__999883__D585-653
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04567.23 best RNA_pol_Rpb2_5 30.3 8.40e-07 49.0% 97.0%
D2 medium residues 147-173_351-429
PDB
D3 medium residues 174-350
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_009162498__Salmon_gill_poxvirus__1680908__D173-349
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12415.15 best rpo132 57.7 7.80e-16 18.1% 93.8%
D4 medium residues 714-766_870-915_991-1015
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00562.34 best RNA_pol_Rpb2_6 28.5 1.20e-06 44.4% 12.3%
PF00562.34 RNA_pol_Rpb2_6 51.8 1.00e-13 41.9% 12.6%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfB06 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.93 91.0 7.16e-01 100.0% 79.4%
1hqmC01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.84 81.0 6.49e-01 100.0% 98.6%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.73 47.0 5.72e-01 83.1% 100.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.63 55.0 5.25e-01 93.5% 88.0%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.61 45.0 4.99e-01 94.4% 100.0%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.60 48.0 5.14e-01 85.5% 97.2%
1h0hA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 47.0 4.18e-01 83.9% 75.0%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 47.0 4.73e-01 85.5% 89.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024674 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.96 84.0 6.62e-01 90.3% 100.0%
4655578 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.95 83.0 6.46e-01 89.5% 99.1%
3613807 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.95 84.0 7.27e-01 91.1% 99.4%
4492078 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 83.0 6.29e-01 90.3% 99.2%
4118150 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 81.0 7.21e-01 88.7% 98.8%
4167437 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 81.0 6.68e-01 87.9% 99.0%
4636141 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 84.0 7.16e-01 91.9% 100.0%
4039119 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.93 79.0 5.98e-01 87.1% 98.4%
4148017 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.93 81.0 6.47e-01 90.3% 99.5%
4946077 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.92 79.0 7.11e-01 87.9% 100.0%
3600872 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.92 79.0 7.00e-01 87.9% 100.0%
4026622 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.91 80.0 6.86e-01 90.3% 97.8%
4888118 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.90 75.0 6.71e-01 84.7% 96.9%
4902571 1.1.2.32 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 0.90 75.0 6.69e-01 84.7% 96.9%
4921633 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.89 74.0 6.02e-01 84.7% 97.5%
3729626 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 55.0 4.96e-01 71.8% 100.0%
3677222 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.78 67.0 6.18e-01 88.7% 100.0%
5001485 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.73 49.0 5.77e-01 83.1% 100.0%
3430527 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.73 46.0 5.63e-01 83.1% 100.0%
4027677 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 48.0 5.63e-01 83.1% 100.0%
4954799 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.71 50.0 5.66e-01 85.5% 95.8%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 47.0 5.55e-01 82.3% 100.0%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.70 49.0 5.65e-01 85.5% 100.0%
3707799 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.70 47.0 5.48e-01 83.9% 100.0%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 49.0 5.45e-01 83.1% 91.0%
3824979 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 48.0 5.50e-01 86.3% 100.0%
3391395 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 51.0 5.54e-01 87.1% 99.0%
5008491 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.66 51.0 5.61e-01 85.5% 100.0%
3273202 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 51.0 5.55e-01 87.1% 100.0%
5076079 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 48.0 4.97e-01 76.6% 90.4%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.64 49.0 4.84e-01 84.7% 76.9%
3926811 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 49.0 5.34e-01 98.4% 100.0%
3781180 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 51.0 5.43e-01 86.3% 100.0%
4492520 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.63 46.0 4.67e-01 75.0% 92.5%
5038954 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.63 52.0 5.44e-01 88.7% 98.3%
4963957 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 46.0 4.65e-01 76.6% 88.0%
4970500 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.61 50.0 5.03e-01 85.5% 91.2%
4992405 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.61 43.0 4.71e-01 71.8% 98.0%
4115281 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 49.0 5.02e-01 84.7% 98.3%
5070673 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 51.0 5.21e-01 88.7% 95.0%
3638494 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.60 49.0 5.13e-01 87.1% 99.1%
3974604 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 48.0 4.92e-01 87.1% 95.8%
4936180 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.58 48.0 4.91e-01 97.6% 91.5%
4973372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 48.0 4.87e-01 88.7% 96.0%
4246959 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 43.0 4.33e-01 78.2% 86.4%
5077212 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 47.0 4.65e-01 87.9% 96.2%
4031919 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 46.0 4.83e-01 90.3% 95.7%
4032519 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 44.0 4.67e-01 89.5% 94.5%
4151022 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.55 46.0 4.75e-01 87.9% 94.8%
D5 medium residues 767-867
PDB
Domain cluster: rep: putative_RNA_polymerase_beta_subunit__YP_009052296__Aureococcus_anophagefferens_virus__1474867__D765-873
D6 medium residues 1016-1069
PDB
Domain cluster: rep: RNA_polymerase__YP_010085252__Western_grey_kangaroopox_virus__1566307__D1016-1074
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04560.26 best RNA_pol_Rpb2_7 43.6 4.50e-11 53.7% 32.2%
D7 medium residues 1070-1157
PDB
Domain cluster: rep: IMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103__D124-188