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RNA_polymerase_subunit_RPO132_protein

Euk-Vir

Raccoonpox_virus

RNA_polymerase_subunit_RPO132_protein__YP_009143452__Raccoonpox_virus__10256

Identity

Accession:
YP_009143452 ↗
Protein ID:
RNA_polymerase_subunit_RPO132_protein
Kingdom:
euk

Quality

82.8 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 171-349
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_009162498__Salmon_gill_poxvirus__1680908__D173-349
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12415.15 best rpo132 64.5 5.70e-18 17.9% 100.0%
D2 high residues 713-772_877-1017
PDB
Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00562.34 best RNA_pol_Rpb2_6 86.9 2.20e-24 71.6% 33.0%
PF00562.34 RNA_pol_Rpb2_6 37.1 2.90e-09 29.8% 14.8%
D3 high residues 780-874
PDB
Domain cluster: rep: putative_RNA_polymerase_beta_subunit__YP_009052296__Aureococcus_anophagefferens_virus__1474867__D765-873
D4 medium residues 48-138
PDB
Domain cluster: rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D47-126
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 43.0 4.63e-01 85.7% 67.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.71 39.0 4.66e-01 94.5% 81.7%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 43.0 3.72e-01 84.6% 42.0%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 42.0 3.38e-01 82.4% 35.9%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.64 45.0 4.08e-01 91.2% 54.9%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.77e-01 83.5% 46.0%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.77e-01 84.6% 46.8%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.63 45.0 3.64e-01 87.9% 39.2%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.44e-01 82.4% 37.7%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 40.0 3.53e-01 82.4% 44.4%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 40.0 3.57e-01 86.8% 46.5%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.58e-01 82.4% 44.6%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.27e-01 80.2% 67.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 49.0 4.17e-01 96.7% 55.1%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 34.0 2.55e-01 79.1% 23.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 50.0 4.20e-01 95.6% 55.5%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 3.52e-01 89.0% 51.2%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.44e-01 92.3% 41.8%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 49.0 3.94e-01 94.5% 70.7%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 45.0 3.53e-01 87.9% 51.3%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.55 47.0 4.14e-01 92.3% 75.8%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 49.0 3.85e-01 97.8% 86.5%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.78e-01 92.3% 51.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.29e-01 93.4% 44.2%
2je2A00 3.50.70.20 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › Cytochrome P460 0.53 38.0 3.26e-01 94.5% 45.2%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.79e-01 84.6% 69.9%
1ddqC02 3.90.1100.10 Alpha Beta › Alpha-Beta Complex › Rna Polymerase Beta Subunit; Chain: C,domain 2 › 0.52 44.0 3.01e-01 96.7% 25.5%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 41.0 3.67e-01 85.7% 71.3%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.73e-01 87.9% 67.5%
4lzkA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.51 44.0 3.69e-01 95.6% 91.2%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.85e-01 92.3% 24.9%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.30e-01 86.8% 93.9%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.50 42.0 3.38e-01 94.5% 53.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2773890 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.79 74.0 6.20e-01 98.9% 81.1%
4887315 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.78 74.0 5.53e-01 100.0% 58.0%
4004191 2484.1.1.99 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.73 42.0 3.19e-01 80.2% 26.0%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.73 46.0 3.95e-01 85.7% 40.7%
3934415 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.68 38.0 3.37e-01 83.5% 37.0%
4016816 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 50.0 5.20e-01 90.1% 89.4%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.62 48.0 3.99e-01 87.9% 47.5%
3573723 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.61 48.0 2.92e-01 93.4% 14.5%
3854926 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 48.0 3.17e-01 100.0% 19.8%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.60 49.0 3.99e-01 95.6% 47.6%
5059473 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.59 52.0 3.57e-01 97.8% 45.1%
3744704 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.58 48.0 3.16e-01 87.9% 45.2%
3682806 213.1.1.71 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29847 0.58 46.0 3.74e-01 85.7% 74.1%
3459363 243.3.1.74 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 0.58 44.0 4.54e-01 86.8% 88.2%
4984424 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 44.0 2.92e-01 83.5% 84.8%
3598127 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.78e-01 95.6% 18.0%
3399719 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 46.0 4.42e-01 92.3% 77.1%
3508989 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.56 30.0 2.57e-01 73.6% 29.7%
146240 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.56 48.0 3.83e-01 98.9% 47.3%
3238729 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.17e-01 93.4% 85.4%
3808531 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 46.0 3.15e-01 91.2% 92.3%
4370831 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.54 46.0 3.32e-01 100.0% 32.1%
3569021 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 46.0 3.71e-01 100.0% 47.0%
4020255 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.54 43.0 3.17e-01 85.7% 45.5%
5000297 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.54 48.0 3.30e-01 100.0% 41.2%
1108092 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.54 46.0 3.64e-01 96.7% 67.5%
4887387 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.53 46.0 3.80e-01 98.9% 53.2%
4585275 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.53 45.0 3.17e-01 97.8% 29.7%
4946072 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.52 46.0 3.24e-01 98.9% 41.0%
4896480 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.52 46.0 3.76e-01 98.9% 52.6%
4876253 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.52 44.0 4.14e-01 97.8% 74.8%
3494162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.16e-01 94.5% 90.4%
4310350 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.52 44.0 3.17e-01 98.9% 32.1%
3739945 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 44.0 2.89e-01 91.2% 34.4%
4026277 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.98e-01 91.2% 31.9%
4660220 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.52 45.0 3.22e-01 98.9% 31.9%
3601611 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.52 45.0 3.17e-01 100.0% 42.8%
3437564 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 44.0 3.69e-01 95.6% 67.9%
3760087 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 42.0 3.36e-01 100.0% 41.5%
4416308 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.51 44.0 3.18e-01 96.7% 36.4%
2581320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.48e-01 80.2% 59.2%
4090807 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.51 43.0 3.18e-01 100.0% 35.7%
3032957 213.1.1.71 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29847 0.50 44.0 3.31e-01 100.0% 84.6%
4672222 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.50 44.0 3.18e-01 100.0% 33.3%
3201856 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.50 41.0 2.50e-01 89.0% 21.8%
4012048 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.74e-01 89.0% 34.9%
3924083 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.50 29.0 2.41e-01 94.5% 28.8%
3501388 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 42.0 3.74e-01 93.4% 76.3%
D5 medium residues 361-423
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 57.0 4.88e-01 79.4% 64.6%
3b77B02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 57.0 5.13e-01 82.5% 100.0%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.73 50.0 5.12e-01 71.4% 87.1%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.73 56.0 3.92e-01 82.5% 27.9%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 51.0 3.46e-01 74.6% 23.4%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 57.0 5.02e-01 85.7% 71.7%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 56.0 4.29e-01 85.7% 61.8%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 5.54e-01 87.3% 94.7%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 55.0 4.26e-01 87.3% 68.4%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 51.0 4.23e-01 79.4% 59.8%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 4.15e-01 74.6% 53.6%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 54.0 3.55e-01 88.9% 38.5%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.68 52.0 4.45e-01 81.0% 67.4%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 61.0 4.70e-01 98.4% 82.6%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.67 55.0 5.08e-01 90.5% 90.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 54.0 4.60e-01 87.3% 70.7%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.67 48.0 3.76e-01 76.2% 38.9%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.66 60.0 4.71e-01 100.0% 84.4%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.65 53.0 4.16e-01 87.3% 52.8%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.63 50.0 3.60e-01 88.9% 84.6%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.62 44.0 4.02e-01 84.1% 56.6%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 50.0 4.76e-01 88.9% 94.7%
3g80A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 46.0 4.41e-01 81.0% 75.3%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 48.0 4.19e-01 90.5% 57.7%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 4.21e-01 84.1% 100.0%
2p3yA02 1.10.3360.10 Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain 0.53 40.0 3.41e-01 82.5% 85.0%
1m4rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 41.0 3.21e-01 88.9% 68.1%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.51 35.0 3.83e-01 98.4% 88.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3608012 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.79 57.0 5.07e-01 74.6% 72.9%
5003363 7000.1.1.1 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.78 58.0 5.06e-01 77.8% 61.1%
5055517 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.78 66.0 5.01e-01 92.1% 41.4%
3916831 109.4.1.1198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Meckelin 0.77 62.0 4.02e-01 90.5% 23.1%
4951179 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.76 62.0 5.31e-01 88.9% 63.0%
3831185 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 63.0 6.06e-01 88.9% 90.0%
5054424 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.75 60.0 5.55e-01 87.3% 76.2%
4951918 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.74 62.0 5.36e-01 92.1% 66.3%
3685493 605.2.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › DUF7785 0.73 56.0 4.99e-01 81.0% 60.0%
3512559 192.1.1.37 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.72 61.0 6.07e-01 92.1% 93.8%
3963952 3684.1.1.26 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › SirB 0.70 54.0 4.24e-01 81.0% 43.5%
4990316 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 53.0 5.44e-01 98.4% 98.3%
3360645 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 54.0 4.42e-01 95.2% 90.9%
3763861 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.59 47.0 3.47e-01 85.7% 50.6%
3238445 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.54 47.0 2.97e-01 100.0% 45.7%
D6 medium residues 541-688
PDB
Domain cluster: rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D504-695
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04567.23 best RNA_pol_Rpb2_5 32.1 2.40e-07 36.5% 56.1%
D7 medium residues 1074-1164
PDB
Domain cluster: rep: IMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103__D124-188