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RNA_polymerase_subunit_RPO147_protein

Euk-Vir

Raccoonpox_virus

RNA_polymerase_subunit_RPO147_protein__YP_009143406__Raccoonpox_virus__10256

Identity

Accession:
YP_009143406 ↗
Protein ID:
RNA_polymerase_subunit_RPO147_protein
Kingdom:
euk

Quality

83.4 mean pLDDT

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 460-572
PDB
Domain cluster: rep: RNA_polymerase__YP_010085368__Eastern_grey_kangaroopox_virus__2042482__D459-574
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04983.24 best RNA_pol_Rpb1_3 33.8 4.20e-08 100.0% 84.0%
D2 high residues 995-1095
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D1033-1131
D3 medium residues 13-70_190-235
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273
D4 medium residues 71-189
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188
D5 medium residues 285-443
PDB
Domain cluster: rep: LC680885.1__BDE75759.1__X__00221__D247-427
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00623.26 best RNA_pol_Rpb1_2 93.5 2.40e-26 98.1% 95.2%
D6 medium residues 581-744
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_147_kDa_polypeptide__YP_009329703__BeAn_58058_virus__67082__D598-725
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05000.23 best RNA_pol_Rpb1_4 62.7 3.80e-17 66.5% 85.0%
D7 medium residues 745-789_918-958_1229-1252
PDB
Domain cluster: rep: RNA_polymerase_subunit__YP_009177121__Turkeypox_virus__336486__D729-783_925-958
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04998.23 best RNA_pol_Rpb1_5 43.3 4.60e-11 93.6% 29.6%
D8 medium residues 790-845
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8a0cA01 3.40.50.11820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CDP-glycerol glycerophosphotransferase, N-terminal domain 0.52 42.0 3.10e-01 92.9% 96.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4887311 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.98 85.0 6.24e-01 100.0% 40.5%
4267176 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.53 41.0 2.62e-01 91.1% 85.1%
4276439 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.51 38.0 2.44e-01 89.3% 80.0%
D9 medium residues 846-917
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.65 48.0 4.28e-01 87.5% 55.3%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.64 43.0 4.38e-01 91.7% 71.8%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 48.0 4.68e-01 84.7% 74.1%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.62 53.0 4.53e-01 100.0% 81.7%
4nk2A01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 53.0 4.28e-01 98.6% 83.6%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 41.0 3.66e-01 72.2% 72.7%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.59 46.0 4.35e-01 86.1% 80.7%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 46.0 4.35e-01 87.5% 75.3%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.59 40.0 3.52e-01 72.2% 57.5%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.59 48.0 4.33e-01 94.4% 79.0%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 39.0 4.07e-01 70.8% 86.8%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 47.0 4.48e-01 94.4% 92.0%
5iwuA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 48.0 3.62e-01 98.6% 82.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 38.0 3.72e-01 72.2% 69.2%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 41.0 4.12e-01 87.5% 82.4%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 35.0 3.57e-01 70.8% 69.4%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.52 35.0 3.82e-01 70.8% 94.6%
2wgoA00 3.10.450.260 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.73e-01 88.9% 84.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.51 36.0 3.91e-01 80.6% 96.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4887311 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 1.00 94.0 7.47e-01 100.0% 55.6%
3365302 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 57.0 3.88e-01 91.7% 77.9%
4964983 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 47.0 4.41e-01 70.8% 65.6%
4965039 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.67 56.0 3.91e-01 94.4% 27.3%
3290543 150.5.1.11 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › T7SS_ESX_EspC 0.66 45.0 3.96e-01 70.8% 47.2%
3247035 206.1.1.28 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.63 55.0 3.64e-01 100.0% 43.3%
3200003 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.62 44.0 3.82e-01 75.0% 83.5%
4192675 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.60 50.0 4.63e-01 94.4% 82.1%
4144086 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.60 45.0 4.17e-01 83.3% 68.0%
4025800 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 48.0 4.43e-01 88.9% 80.0%
4478129 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.60 46.0 4.34e-01 84.7% 74.4%
5069176 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 47.0 4.78e-01 88.9% 92.9%
3575609 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 44.0 4.62e-01 83.3% 96.9%
3703593 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 47.0 3.60e-01 91.7% 42.2%
4943264 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.58 48.0 4.77e-01 94.4% 98.7%
4995204 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 47.0 4.75e-01 94.4% 98.6%
5014266 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 48.0 4.76e-01 95.8% 94.7%
3927235 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.57 46.0 4.70e-01 91.7% 95.7%
3288893 604.1.1.141 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF349 0.57 39.0 3.85e-01 75.0% 65.0%
3404085 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.56 38.0 3.83e-01 70.8% 90.7%
3924999 3687.1.1.1 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › FAD_binding_1 0.56 43.0 3.50e-01 86.1% 44.4%
1871752 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.55 39.0 3.34e-01 75.0% 61.7%
3335320 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.54 40.0 3.80e-01 97.2% 64.4%
3988260 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.53 35.0 2.38e-01 70.8% 15.4%
3599088 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.52 41.0 3.50e-01 86.1% 65.3%
3901917 1134.1.1.7 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.50 41.0 4.22e-01 88.9% 91.4%