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RNA_polymerase_subunit_RPO19
Euk-VirTurkeypox_virus
RNA_polymerase_subunit_RPO19__YP_009177145__Turkeypox_virus__336486
Identity
- Accession:
- YP_009177145 ↗
- Protein ID:
- RNA_polymerase_subunit_RPO19
- Kingdom:
- euk
Quality
64.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-128
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05320.18 best | Pox_RNA_Pol_19 | 104.1 | 1.10e-29 | 100.0% | 38.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qiwK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.78 | 52.0 | 5.57e-01 | 75.4% | 80.4% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.70 | 47.0 | 3.71e-01 | 70.8% | 71.4% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.54 | 41.0 | 3.92e-01 | 81.5% | 71.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838265 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.72 | 50.0 | 4.95e-01 | 76.9% | 68.1% |
| 134860 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.72 | 51.0 | 4.70e-01 | 76.9% | 58.5% |
| 4946274 | 152.1.1.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 | 0.71 | 54.0 | 5.06e-01 | 81.5% | 67.5% |
| 4059386 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.71 | 49.0 | 4.94e-01 | 76.9% | 72.3% |
| 3696266 | 109.4.1.547 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clr5 | 0.57 | 51.0 | 2.99e-01 | 100.0% | 23.8% |
| 3507856 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 36.0 | 2.55e-01 | 70.8% | 50.7% |
| 3209995 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 38.0 | 2.46e-01 | 80.0% | 70.6% |
| 4666969 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.52 | 40.0 | 3.13e-01 | 84.6% | 61.4% |
| 4176972 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.51 | 40.0 | 3.12e-01 | 84.6% | 61.4% |
| 4461833 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.50 | 37.0 | 2.95e-01 | 78.5% | 59.2% |