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RNA_polymerase_subunit
Euk-VirEptesipox_virus
RNA_polymerase_subunit__YP_009407989__Eptesipox_virus__1329402
Identity
- Accession:
- YP_009407989 ↗
- Protein ID:
- RNA_polymerase_subunit
- Kingdom:
- euk
Quality
68.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Vespertilionpoxvirus›
Eptesipox_virus
TaxID: 1329402
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-136
Domain cluster:
rep: transcription_factor_S-II_-TFIIS-_E4L__YP_009162443__Salmon_gill_poxvirus__1680908__D10-135
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12410.15 best | rpo30_N | 180.3 | 2.40e-53 | 89.3% | 85.9% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 35.0 | 4.24e-01 | 90.8% | 79.5% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.66 | 36.0 | 3.67e-01 | 91.6% | 54.4% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.53 | 33.0 | 2.94e-01 | 77.9% | 42.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048431 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.52 | 46.0 | 3.40e-01 | 96.2% | 67.5% |
| 3538350 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.51 | 30.0 | 3.06e-01 | 83.2% | 57.8% |
| 3195345 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 32.0 | 3.07e-01 | 78.6% | 52.5% |
| 3352956 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 29.0 | 2.53e-01 | 75.6% | 34.8% |
D2
medium
residues 138-196
Domain cluster:
rep: putative_transcription_elongation_factor_S-II-related_protein__YP_009507517__Heterosigma_akashiwo_virus_01__97195__D153-194
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01096.24 best | Zn_ribbon_TFIIS | 58.1 | 8.40e-16 | 66.1% | 100.0% |