RNaseH_reverse_transcriptase

Euk-Vir

Sweet_potato_pakakuy_virus

RNaseH_reverse_transcriptase__YP_004581513__Sweet_potato_pakakuy_virus__2034762

Identity

71.4 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Sweet_potato_pakakuy_virus

TaxID: 2034762

View cluster (17 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-150

PDB

Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	30.0	5.20e-07	96.2%	46.2%
PF00077.26	RVP	51.5	1.50e-13	84.9%	92.1%

D2 high residues 431-508

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D3 high residues 511-654

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	46.8	4.10e-12	81.9%	90.5%

D4 medium residues 159-184_290-313_368-430

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	50.7	2.90e-13	67.3%	35.0%

D5 medium residues 185-289_314-367

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	39.8	6.30e-10	38.4%	34.5%