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RNaseIII
Euk-VirHeliothis_virescens_ascovirus_3g
RNaseIII__YP_009701683__Heliothis_virescens_ascovirus_3g__1246651
Identity
- Accession:
- YP_009701683 ↗
- Protein ID:
- RNaseIII
- Kingdom:
- euk
Quality
66.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Ascoviridae›
Ascovirus›
Heliothis_virescens_ascovirus_3g
TaxID: 1246651
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 182-369
Domain cluster:
rep: ribonuclease_III__YP_009345357__Noumeavirus__1955558__D4-208
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00636.32 best | Ribonuclease_3 | 53.5 | 5.00e-14 | 69.7% | 96.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.91 | 66.0 | 7.44e-01 | 99.5% | 92.6% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.89 | 62.0 | 7.11e-01 | 96.8% | 91.7% |
| 1jfzA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.89 | 63.0 | 7.14e-01 | 99.5% | 91.2% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.85 | 52.0 | 5.97e-01 | 87.2% | 80.6% |
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.84 | 63.0 | 6.97e-01 | 97.3% | 92.9% |
| 4oogC01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.82 | 66.0 | 7.13e-01 | 99.5% | 95.7% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.80 | 43.0 | 5.22e-01 | 92.0% | 79.2% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.74 | 49.0 | 5.97e-01 | 93.6% | 99.2% |
| 5iduC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 32.0 | 3.46e-01 | 95.2% | 61.0% |
| 2rjiA00 | 1.10.1740.170 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI | 0.57 | 26.0 | 3.64e-01 | 92.0% | 91.7% |
| 1exaA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 41.0 | 3.85e-01 | 76.6% | 82.2% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.52 | 25.0 | 3.47e-01 | 92.0% | 94.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4045736 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.92 | 66.0 | 7.26e-01 | 100.0% | 87.3% |
| 4070521 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.90 | 62.0 | 6.90e-01 | 97.3% | 85.8% |
| 52378 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.89 | 64.0 | 7.25e-01 | 98.9% | 93.2% |
| 4460349 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 67.0 | 7.05e-01 | 100.0% | 84.7% |
| 4237384 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.88 | 63.0 | 7.24e-01 | 98.9% | 94.5% |
| 4472718 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.87 | 60.0 | 6.12e-01 | 96.8% | 72.2% |
| 3508663 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.81 | 74.0 | 7.30e-01 | 99.5% | 89.5% |
| 3497133 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.80 | 58.0 | 6.20e-01 | 94.1% | 83.6% |
| 4427540 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.80 | 76.0 | 7.41e-01 | 100.0% | 93.7% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.76 | 73.0 | 6.79e-01 | 100.0% | 95.1% |
| 3408861 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.76 | 61.0 | 6.14e-01 | 95.2% | 81.6% |
| 3739403 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.76 | 57.0 | 6.19e-01 | 91.0% | 90.0% |
| 4482046 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.76 | 71.0 | 7.14e-01 | 98.9% | 99.5% |
| 3459299 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.75 | 69.0 | 6.83e-01 | 100.0% | 92.3% |
| 3492891 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.73 | 59.0 | 5.89e-01 | 95.2% | 81.1% |
| 3420091 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.71 | 59.0 | 5.88e-01 | 95.2% | 83.2% |
| 3329782 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.67 | 60.0 | 5.67e-01 | 95.2% | 79.5% |
| 3409328 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.66 | 58.0 | 5.62e-01 | 95.2% | 82.4% |
| 3588332 | 5069.1.1.23 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2798 | 0.59 | 33.0 | 3.73e-01 | 85.6% | 71.4% |
| 3276237 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 28.0 | 2.98e-01 | 95.7% | 58.7% |
D2
high
residues 371-442
Domain cluster:
rep: RNaseIII__YP_009701491__Heliothis_virescens_ascovirus_3f__328614__D374-442
D3
high
residues 462-624
Domain cluster:
rep: ribonuclease_III__YP_009345357__Noumeavirus__1955558__D4-208
D4
high
residues 628-718
Domain cluster:
rep: RNaseIII__YP_009701491__Heliothis_virescens_ascovirus_3f__328614__D631-708