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RR1

Euk-Vir

Plodia_interpunctella_granulovirus

RR1__YP_009330244__Plodia_interpunctella_granulovirus__262175

Identity

Accession:: YP_009330244 ↗
Protein ID:: RR1
Kingdom:: euk

Quality

87.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Plodia_interpunctella_granulovirus

TaxID: 262175

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-73

PDB

Domain cluster: rep: ribonucleotide_reductase_1__YP_009182313__Diatraea_saccharalis_granulovirus__1675862__D33-86

D2 medium residues 298-470

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	31.7	9.30e-08	100.0%	30.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8b9zK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	25.0	3.40e-01	91.3%	86.8%
1bbhA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.51	33.0	3.70e-01	85.0%	84.0%
3tu3B03	1.20.1050.100	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	30.0	3.10e-01	87.9%	58.2%
2i7nA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.50	35.0	3.76e-01	100.0%	80.6%
4oh3A00	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.50	37.0	2.68e-01	75.7%	75.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5034764	1076.1.1.0 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related	0.65	46.0	4.37e-01	72.3%	95.6%
4932209	3843.1.1.6 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF	0.62	27.0	3.88e-01	72.3%	87.5%
4683274	3843.1.1.6 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF	0.61	27.0	3.84e-01	71.7%	86.3%
4944098	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.59	27.0	3.51e-01	71.7%	74.0%
4945390	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.57	36.0	4.07e-01	80.3%	80.7%
3582242	1075.5.1.5 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1	0.54	42.0	3.63e-01	82.7%	72.1%
3233761	1075.5.1.5 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1	0.53	43.0	3.63e-01	84.4%	77.5%
3261184	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.53	33.0	2.95e-01	71.1%	42.4%

D3 medium residues 476-580

PDB

Domain cluster: rep: JM119__YP_238422__Macaca_fuscata_rhadinovirus__272551__D646-749

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	35.5	6.60e-09	62.9%	10.7%