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RR1

Euk-Vir

Spodoptera_littoralis_nucleopolyhedrovirus

RR1__YP_009505829__Spodoptera_littoralis_nucleopolyhedrovirus__10456

Identity

Accession:
YP_009505829 ↗
Protein ID:
RR1
Kingdom:
euk

Quality

88.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_littoralis_nucleopolyhedrovirus

TaxID: 10456

Cluster

View cluster (122 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-134
PDB
Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03477.22 best ATP-cone 51.2 2.10e-13 100.0% 97.7%
D2 medium residues 258-376_468-486
PDB
Domain cluster: rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 160.3 9.70e-47 84.8% 21.8%
D3 medium residues 377-467_756-779
PDB
Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063125__D8-101
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 106.3 2.30e-30 80.0% 17.4%
D4 medium residues 487-667_735-755
PDB
Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 232.0 1.80e-68 92.1% 34.9%
D5 medium residues 668-734
PDB
Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 53.6 2.10e-14 100.0% 12.6%