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RR1
Euk-VirSpodoptera_eridania_nucleopolyhedrovirus
RR1__YP_010087146__Spodoptera_eridania_nucleopolyhedrovirus__2315721
Identity
- Accession:
- YP_010087146 ↗
- Protein ID:
- RR1
- Kingdom:
- euk
Quality
79.8
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Spodoptera_eridania_nucleopolyhedrovirus
TaxID: 2315721
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 152-233
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.70 | 49.0 | 5.49e-01 | 81.7% | 96.8% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.68 | 56.0 | 5.04e-01 | 91.5% | 79.1% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 51.0 | 5.00e-01 | 81.7% | 75.0% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 46.0 | 3.47e-01 | 72.0% | 69.4% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.66 | 46.0 | 5.11e-01 | 86.6% | 96.8% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.65 | 49.0 | 4.03e-01 | 82.9% | 81.4% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.59 | 45.0 | 3.55e-01 | 81.7% | 98.2% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 50.0 | 4.93e-01 | 97.6% | 92.0% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 44.0 | 4.38e-01 | 85.4% | 94.2% |
| 2k19A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.55 | 46.0 | 4.40e-01 | 93.9% | 80.6% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 43.0 | 4.07e-01 | 86.6% | 89.2% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 44.0 | 4.00e-01 | 86.6% | 93.6% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 44.0 | 4.11e-01 | 86.6% | 86.0% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.54 | 48.0 | 3.89e-01 | 97.6% | 80.1% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.53 | 37.0 | 3.82e-01 | 73.2% | 92.4% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.53 | 42.0 | 4.14e-01 | 92.7% | 80.0% |
| 1adeA02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.52 | 45.0 | 4.27e-01 | 100.0% | 91.0% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.52 | 46.0 | 3.77e-01 | 97.6% | 79.1% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.51 | 45.0 | 4.09e-01 | 100.0% | 80.7% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 44.0 | 3.06e-01 | 98.8% | 49.1% |
| 2q2rA02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.50 | 41.0 | 3.19e-01 | 93.9% | 80.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519243 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.92 | 80.0 | 5.79e-01 | 91.5% | 37.5% |
| 4485359 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.90 | 81.0 | 7.67e-01 | 98.8% | 82.1% |
| 3486229 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.89 | 85.0 | 8.20e-01 | 100.0% | 96.7% |
| 3784313 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 82.0 | 7.89e-01 | 100.0% | 94.4% |
| 5010578 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.72 | 67.0 | 6.51e-01 | 100.0% | 93.3% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.72 | 64.0 | 5.99e-01 | 98.8% | 81.0% |
| 3287733 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 54.0 | 5.63e-01 | 93.9% | 98.7% |
| 3805676 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.66 | 51.0 | 4.95e-01 | 82.9% | 90.0% |
| 3900969 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.62 | 43.0 | 3.80e-01 | 70.7% | 81.7% |
| 4528489 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.57 | 48.0 | 4.64e-01 | 98.8% | 98.9% |
| 5054723 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.56 | 46.0 | 4.60e-01 | 90.2% | 91.7% |
| 5065130 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.56 | 46.0 | 4.61e-01 | 96.3% | 90.6% |
| 4281149 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.55 | 45.0 | 4.32e-01 | 90.2% | 84.2% |
| 4402843 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.55 | 37.0 | 3.36e-01 | 70.7% | 84.3% |
| 4945865 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.55 | 43.0 | 4.29e-01 | 89.0% | 86.5% |
| 5053481 | 633.12.1.1 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 | 0.54 | 44.0 | 4.42e-01 | 93.9% | 94.1% |
| 3257456 | 633.6.1.8 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 | 0.53 | 43.0 | 3.41e-01 | 91.5% | 73.1% |
| 4036522 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.53 | 35.0 | 3.50e-01 | 70.7% | 75.6% |
D2
high
residues 354-568
Domain cluster:
rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 250.9 | 3.50e-74 | 100.0% | 41.8% |
D3
medium
residues 235-353
Domain cluster:
rep: NC_007021.1__YP_238596.1__TwortORF045__00062__D44-158
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 80.0 | 1.50e-22 | 61.3% | 97.4% |
D4
medium
residues 573-754_823-891
Domain cluster:
rep: OM654377.1__UNY40333.1__KLEP7_gp197__00197__D5-152_207-277
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 218.1 | 3.00e-64 | 73.7% | 34.5% |
| PF02867.21 | Ribonuc_red_lgC | 52.3 | 5.30e-14 | 19.9% | 9.3% |
D5
medium
residues 755-822
Domain cluster:
rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 52.1 | 6.00e-14 | 100.0% | 12.6% |