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RRM_superfamily_incomplete_domain

Euk-Vir

Pandoravirus_salinus

RRM_superfamily_incomplete_domain__YP_008438510__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438510 ↗
Protein ID:
RRM_superfamily_incomplete_domain
Kingdom:
euk

Quality

85.9 mean pLDDT

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 248-357
PDB
Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
D2 medium residues 193-247
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.75 61.0 4.45e-01 87.3% 43.0%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.65 53.0 4.59e-01 89.1% 60.2%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.55 38.0 3.47e-01 78.2% 53.2%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.17e-01 80.0% 69.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.52 37.0 3.49e-01 78.2% 80.0%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.51 37.0 2.95e-01 76.4% 67.3%
2bq4A00 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.50 37.0 2.94e-01 80.0% 87.7%
4j7hA02 3.90.79.40 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit 0.50 39.0 2.82e-01 87.3% 72.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277754 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.89 62.0 5.62e-01 72.7% 61.4%
4986026 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.84 68.0 4.57e-01 85.5% 25.9%
4989310 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.84 68.0 4.53e-01 85.5% 25.4%
4999440 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.81 59.0 5.02e-01 76.4% 50.6%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.79 63.0 4.96e-01 85.5% 50.5%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 58.0 4.05e-01 78.2% 26.7%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.77 57.0 3.73e-01 78.2% 19.6%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.76 60.0 5.42e-01 85.5% 66.7%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 59.0 5.22e-01 83.6% 61.3%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 56.0 4.31e-01 78.2% 36.7%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 61.0 5.26e-01 87.3% 60.0%
4979945 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.75 62.0 4.67e-01 89.1% 48.8%
119462 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 61.0 4.43e-01 89.1% 43.0%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.69 50.0 3.78e-01 78.2% 38.8%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 55.0 4.53e-01 89.1% 51.5%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 49.0 3.92e-01 78.2% 57.3%
5080086 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.62 46.0 4.06e-01 78.2% 58.7%
3415020 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.62 47.0 4.31e-01 89.1% 100.0%
4675823 377.1.1.3 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK 0.57 44.0 4.24e-01 89.1% 100.0%
4242930 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.55 38.0 3.30e-01 78.2% 45.6%
4342292 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.54 38.0 3.86e-01 76.4% 87.3%
3170501 327.19.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.53 41.0 3.50e-01 83.6% 86.7%
1828185 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 43.0 2.81e-01 96.4% 35.7%