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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00020
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-41
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.76 | 58.0 | 4.97e-01 | 90.2% | 52.2% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.72 | 46.0 | 3.75e-01 | 73.2% | 38.0% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.69 | 45.0 | 3.98e-01 | 70.7% | 47.5% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.62 | 42.0 | 3.44e-01 | 80.5% | 38.2% |
| 3vtiA07 | 1.10.357.160 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.61 | 50.0 | 3.50e-01 | 97.6% | 88.4% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 3.78e-01 | 73.2% | 91.4% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.60 | 44.0 | 2.64e-01 | 80.5% | 11.4% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.60 | 42.0 | 2.82e-01 | 73.2% | 19.7% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.60 | 50.0 | 4.25e-01 | 100.0% | 90.5% |
| 4qjfB01 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 38.0 | 3.55e-01 | 75.6% | 66.7% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 44.0 | 4.01e-01 | 90.2% | 72.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3794323 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.78 | 67.0 | 6.54e-01 | 100.0% | 95.6% |
| 4483569 | 148.1.1.41 ↗ | alpha arrays › Histone-like › Histone-related › Histone › GlutR_dimer | 0.72 | 48.0 | 4.28e-01 | 90.2% | 48.3% |
| 3255531 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.71 | 56.0 | 4.42e-01 | 87.8% | 89.4% |
| 3904078 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 44.0 | 3.79e-01 | 80.5% | 49.3% |
| 4666568 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.56 | 41.0 | 2.44e-01 | 80.5% | 9.4% |