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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00058
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00058
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-209
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01351.26 best | RNase_HII | 111.5 | 7.30e-32 | 89.6% | 98.5% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etjA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.92 | 81.0 | 8.01e-01 | 95.5% | 86.2% |
| 1i39A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.90 | 63.0 | 7.23e-01 | 71.3% | 100.0% |
| 3p5jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.89 | 64.0 | 6.67e-01 | 73.8% | 89.5% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.88 | 62.0 | 6.75e-01 | 71.3% | 100.0% |
| 2d0bA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.88 | 78.0 | 7.61e-01 | 92.1% | 97.3% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 76.0 | 7.77e-01 | 90.6% | 100.0% |
| 3vn5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.81 | 72.0 | 7.50e-01 | 92.1% | 100.0% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.69 | 49.0 | 4.60e-01 | 71.8% | 88.2% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.69 | 48.0 | 4.50e-01 | 70.8% | 88.4% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 43.0 | 4.28e-01 | 73.8% | 94.9% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.59 | 13.0 | 2.91e-01 | 87.1% | 81.2% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.96 | 87.0 | 8.93e-01 | 92.1% | 95.9% | |
| 4398538 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.96 | 91.0 | 8.75e-01 | 96.0% | 96.8% |
| None | — | 0.96 | 85.0 | 8.72e-01 | 90.6% | 95.4% | |
| None | — | 0.96 | 84.0 | 8.92e-01 | 90.6% | 100.0% | |
| 4271759 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.95 | 89.0 | 8.64e-01 | 96.0% | 100.0% |
| 4165286 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.95 | 88.0 | 8.73e-01 | 95.0% | 95.2% |
| None | — | 0.95 | 91.0 | 8.44e-01 | 98.0% | 87.1% | |
| 4176554 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.94 | 86.0 | 7.51e-01 | 92.6% | 82.5% |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.94 | 84.0 | 8.57e-01 | 91.1% | 99.5% |
| 3599190 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.94 | 78.0 | 7.91e-01 | 85.1% | 99.5% |
| 4262002 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.94 | 90.0 | 8.10e-01 | 98.0% | 81.8% |
| 3701846 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.93 | 84.0 | 7.34e-01 | 92.1% | 96.1% |
| 4175479 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.93 | 89.0 | 8.38e-01 | 98.0% | 86.4% |
| 4417609 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.93 | 91.0 | 8.52e-01 | 100.0% | 92.8% |
| None | — | 0.93 | 91.0 | 8.68e-01 | 100.0% | 95.6% | |
| 4945436 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.93 | 81.0 | 7.96e-01 | 90.1% | 94.9% |
| 4993672 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 82.0 | 8.12e-01 | 91.1% | 99.5% |
| 4297736 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 82.0 | 8.59e-01 | 92.1% | 98.9% |
| 4053614 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 82.0 | 7.80e-01 | 91.6% | 89.9% |
| 4947312 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 80.0 | 7.89e-01 | 90.6% | 96.2% |
| 4995983 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 84.0 | 7.71e-01 | 95.5% | 91.4% |
| 3248200 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 81.0 | 7.67e-01 | 92.6% | 93.5% |
| 4016925 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 80.0 | 6.88e-01 | 92.1% | 82.7% |
| 3632192 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 80.0 | 6.97e-01 | 92.1% | 82.8% |
| 3626299 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.90 | 80.0 | 6.96e-01 | 92.1% | 78.2% |
| 4524222 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 81.0 | 7.54e-01 | 93.1% | 95.8% |
| 4994572 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 78.0 | 7.83e-01 | 89.6% | 100.0% |
| 4989427 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 79.0 | 7.94e-01 | 91.6% | 100.0% |
| 5004347 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 80.0 | 7.56e-01 | 93.1% | 97.9% |
| 4930141 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 76.0 | 7.67e-01 | 88.6% | 99.5% |
| 3607891 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 82.0 | 7.56e-01 | 97.0% | 94.8% |
| 4223327 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 80.0 | 7.57e-01 | 94.6% | 93.1% |
| 5043207 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.87 | 78.0 | 7.49e-01 | 92.6% | 97.3% |
| 4995780 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.87 | 76.0 | 6.61e-01 | 89.6% | 100.0% |
| 4332144 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 81.0 | 7.75e-01 | 97.0% | 98.2% |
| 4243829 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 79.0 | 7.67e-01 | 95.0% | 99.5% |
| 1837475 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 77.0 | 7.80e-01 | 93.1% | 100.0% |
| 4682851 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 81.0 | 7.80e-01 | 97.5% | 100.0% |
| 3593247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 82.0 | 7.59e-01 | 99.5% | 96.7% |
| 4998267 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 74.0 | 7.45e-01 | 91.1% | 100.0% |
| 5046769 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 76.0 | 7.54e-01 | 94.6% | 99.5% |
| 4965255 | 2484.1.1.264 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 | 0.83 | 58.0 | 5.55e-01 | 71.3% | 93.9% |
| 5028451 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 62.0 | 7.09e-01 | 83.7% | 100.0% |
| 4975324 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.80 | 59.0 | 6.71e-01 | 81.7% | 98.1% |
| 2526820 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.69 | 48.0 | 4.64e-01 | 70.8% | 85.3% |
| 5048376 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 48.0 | 3.83e-01 | 74.3% | 90.0% |
| 3986500 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.63 | 44.0 | 5.05e-01 | 94.6% | 96.7% |
| 4270370 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.61 | 42.0 | 4.61e-01 | 70.8% | 90.0% |
| 3411385 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 40.0 | 4.18e-01 | 76.2% | 73.0% |
| 3940074 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 41.0 | 4.84e-01 | 70.3% | 100.0% |
| 3259935 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.57 | 49.0 | 4.47e-01 | 88.1% | 89.3% |
| 4981268 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.57 | 47.0 | 4.32e-01 | 86.6% | 94.6% |
| 5080098 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.56 | 49.0 | 4.16e-01 | 94.1% | 93.9% |
| 4972211 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 48.0 | 3.77e-01 | 92.6% | 88.7% |
| 3503310 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 27.0 | 3.63e-01 | 92.1% | 89.1% |
| 4009918 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 38.0 | 3.36e-01 | 73.8% | 78.6% |
| 5041035 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 26.0 | 3.61e-01 | 90.6% | 99.0% |
| 3757121 | 11.1.1.899 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26141 | 0.50 | 27.0 | 3.58e-01 | 90.1% | 96.3% |