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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00111
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00111
Identity
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 192-288
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00298__D743-827
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 23.4 | 8.80e-05 | 30.9% | 100.0% |
D2
medium
residues 295-416
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00298__D743-827
D3
medium
residues 510-551
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p79A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.74 | 46.0 | 2.98e-01 | 92.9% | 14.9% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.70 | 49.0 | 3.93e-01 | 76.2% | 85.1% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.66 | 46.0 | 4.01e-01 | 76.2% | 75.4% |
| 2yq2A01 | 2.60.320.20 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › Pestivirus envelope glycoprotein E2, domain A | 0.65 | 45.0 | 3.64e-01 | 73.8% | 63.6% |
| 1q8mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 48.0 | 3.47e-01 | 81.0% | 39.7% |
| 1vloA01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.65 | 48.0 | 3.38e-01 | 88.1% | 25.0% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.64 | 47.0 | 4.18e-01 | 83.3% | 74.2% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.63 | 43.0 | 3.54e-01 | 76.2% | 57.3% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 48.0 | 3.40e-01 | 95.2% | 39.1% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.62 | 50.0 | 3.52e-01 | 100.0% | 72.1% |
| 3odtA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 47.0 | 2.86e-01 | 90.5% | 90.9% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 41.0 | 3.54e-01 | 76.2% | 72.2% |
| 3vmaA03 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.59 | 48.0 | 3.88e-01 | 100.0% | 45.6% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 2.96e-01 | 100.0% | 93.5% |
| 2g7cA02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.58 | 42.0 | 3.45e-01 | 85.7% | 79.1% |
| 1ng4A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.57 | 46.0 | 3.38e-01 | 100.0% | 65.7% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.56 | 46.0 | 4.35e-01 | 95.2% | 88.2% |
| 3hiaA00 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.55 | 39.0 | 3.52e-01 | 81.0% | 89.4% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.54 | 35.0 | 3.02e-01 | 100.0% | 37.3% |
| 4zovB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.68e-01 | 100.0% | 22.3% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 43.0 | 3.39e-01 | 100.0% | 42.5% |
| 1b9wA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.54 | 35.0 | 3.36e-01 | 100.0% | 54.9% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.53 | 41.0 | 2.85e-01 | 100.0% | 36.7% |
| 2v05A02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.52 | 38.0 | 2.67e-01 | 83.3% | 33.7% |
| 1s3iA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.52 | 39.0 | 3.13e-01 | 92.9% | 44.1% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.51 | 44.0 | 3.25e-01 | 100.0% | 39.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.74e-01 | 100.0% | 74.0% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 2.66e-01 | 100.0% | 21.2% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.50 | 42.0 | 3.10e-01 | 100.0% | 34.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4468810 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.80 | 52.0 | 3.61e-01 | 85.7% | 22.4% |
| 3996531 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.77 | 54.0 | 5.85e-01 | 81.0% | 91.4% |
| 3990241 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.72 | 49.0 | 4.91e-01 | 71.4% | 79.1% |
| 3506737 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.70 | 49.0 | 4.07e-01 | 76.2% | 53.8% |
| 3939178 | 304.48.1.37 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 | 0.70 | 50.0 | 3.30e-01 | 78.6% | 83.2% |
| 3792870 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.69 | 49.0 | 4.01e-01 | 81.0% | 40.0% |
| 3226732 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.69 | 49.0 | 5.22e-01 | 83.3% | 91.4% |
| 3839366 | 506.2.1.2 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter | 0.69 | 48.0 | 3.85e-01 | 100.0% | 35.6% |
| 5038704 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.68 | 55.0 | 3.75e-01 | 100.0% | 30.6% |
| 5009920 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.67 | 48.0 | 2.88e-01 | 78.6% | 19.0% |
| 3573779 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.67 | 49.0 | 4.04e-01 | 78.6% | 55.0% |
| 3848547 | 356.1.1.0 ↗ | few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors | 0.67 | 45.0 | 4.80e-01 | 78.6% | 85.7% |
| 3509213 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.65 | 45.0 | 3.86e-01 | 76.2% | 77.3% |
| 3520872 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.64 | 48.0 | 4.01e-01 | 83.3% | 89.3% |
| 1883379 | 1103.1.1.1 ↗ | mixed a+b and a/b › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › MvcA_ins | 0.64 | 50.0 | 4.09e-01 | 100.0% | 43.5% |
| 3529394 | 5.1.11.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 | 0.64 | 50.0 | 2.95e-01 | 90.5% | 70.7% |
| 3936314 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 44.0 | 4.69e-01 | 81.0% | 91.4% |
| 3230187 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.63 | 47.0 | 3.98e-01 | 83.3% | 48.0% |
| 3235966 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 46.0 | 4.74e-01 | 83.3% | 85.0% |
| 3164741 | 506.2.1.1 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H | 0.62 | 52.0 | 4.29e-01 | 100.0% | 51.2% |
| 3609788 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 3.98e-01 | 95.2% | 96.2% |
| 3236918 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.60 | 42.0 | 3.47e-01 | 76.2% | 60.0% |
| 4472709 | 3939.1.1.185 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › WD40, Beta-prop_NOL10_N | 0.60 | 46.0 | 2.70e-01 | 90.5% | 79.8% |
| 4003988 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.60 | 45.0 | 3.78e-01 | 83.3% | 82.7% |
| 3311258 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.60 | 48.0 | 3.41e-01 | 100.0% | 41.9% |
| 3216286 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.60 | 46.0 | 2.95e-01 | 88.1% | 88.2% |
| 3970808 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.60 | 49.0 | 3.05e-01 | 100.0% | 43.6% |
| 4966197 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.59 | 48.0 | 2.88e-01 | 100.0% | 46.3% |
| 3395751 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 45.0 | 3.26e-01 | 100.0% | 32.5% |
| 3936024 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 46.0 | 2.83e-01 | 100.0% | 94.5% |
| 3512127 | 220.1.1.9 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs | 0.55 | 42.0 | 3.08e-01 | 83.3% | 41.7% |
| 3633981 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 42.0 | 2.36e-01 | 92.9% | 19.4% |
| 3264768 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 46.0 | 2.74e-01 | 100.0% | 20.6% |
| 4156758 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.53 | 45.0 | 3.23e-01 | 100.0% | 73.8% |
| 3514491 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.53 | 44.0 | 2.60e-01 | 100.0% | 64.9% |
| 3178555 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.53e-01 | 100.0% | 10.2% |
| 4029107 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 45.0 | 2.77e-01 | 100.0% | 95.6% |
| 4013024 | 5.1.4.249 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 | 0.52 | 39.0 | 2.28e-01 | 90.5% | 19.3% |
| 4180736 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.52 | 44.0 | 2.51e-01 | 100.0% | 13.3% |
| 4656688 | 5.1.4.60 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Tectonin | 0.51 | 44.0 | 2.79e-01 | 100.0% | 27.3% |
| 5077455 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.51 | 44.0 | 2.59e-01 | 100.0% | 18.6% |
| 3340525 | 5.1.5.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IP5PC_F | 0.51 | 41.0 | 2.47e-01 | 100.0% | 26.5% |
| 3229953 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.51 | 40.0 | 2.50e-01 | 100.0% | 95.2% |
| 3629867 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 38.0 | 2.29e-01 | 85.7% | 11.4% |
| 4486877 | 3297.1.1.28 ↗ | extended segments › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › Helical hairpin in Ndc80 › WD40, Beta-prop_NOL10_N | 0.51 | 43.0 | 2.51e-01 | 100.0% | 14.9% |
| 3735154 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 43.0 | 2.69e-01 | 100.0% | 34.7% |
| 3926511 | 5.1.5.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CNH | 0.51 | 41.0 | 2.58e-01 | 100.0% | 26.8% |
| 3309658 | 5.1.4.44 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1_2 | 0.50 | 44.0 | 2.62e-01 | 100.0% | 63.6% |
| 4158712 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.50 | 38.0 | 3.40e-01 | 90.5% | 74.3% |
| 4823114 | 5.1.4.265 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st | 0.50 | 44.0 | 3.04e-01 | 100.0% | 45.4% |