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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00124

Bact-Vir

RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00124

Identity

Kingdom:
phage

Quality

80.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-185
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.74 70.0 6.85e-01 100.0% 96.8%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 68.0 6.73e-01 99.3% 99.3%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 55.0 5.69e-01 100.0% 89.5%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.67 64.0 5.59e-01 100.0% 98.0%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.66 56.0 5.84e-01 97.2% 97.7%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 48.0 4.63e-01 100.0% 67.3%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.66 57.0 4.38e-01 92.4% 94.8%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.64 59.0 5.89e-01 100.0% 98.0%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.64 57.0 4.67e-01 94.4% 96.0%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.60 54.0 4.23e-01 95.8% 99.0%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.59 53.0 4.08e-01 95.8% 97.1%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.59 55.0 5.07e-01 100.0% 93.3%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.58 52.0 4.29e-01 95.8% 76.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.58 54.0 4.76e-01 99.3% 85.9%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.56 51.0 4.30e-01 98.6% 93.0%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.56 50.0 3.23e-01 95.1% 83.2%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 50.0 3.75e-01 97.2% 94.9%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 47.0 3.46e-01 90.3% 95.8%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 49.0 3.61e-01 98.6% 92.0%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.55 49.0 3.53e-01 97.9% 98.8%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.54 48.0 3.48e-01 96.5% 98.1%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 44.0 3.28e-01 88.9% 93.1%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 50.0 4.89e-01 100.0% 98.0%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 45.0 3.06e-01 90.3% 95.1%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 46.0 2.98e-01 92.4% 83.0%
2ynkA00 2.40.160.130 Mainly Beta › Beta Barrel › Porin › Capsule assembly protein Wzi 0.53 47.0 3.34e-01 96.5% 94.6%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 47.0 3.48e-01 95.8% 46.2%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.53 49.0 4.03e-01 100.0% 97.2%
4jmdA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.52 46.0 3.87e-01 97.9% 84.8%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.55e-01 94.4% 96.3%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 46.0 3.58e-01 94.4% 57.9%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 3.36e-01 95.1% 58.9%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.96e-01 98.6% 63.6%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 48.0 4.52e-01 99.3% 98.8%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 4.41e-01 93.1% 92.6%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 42.0 2.90e-01 90.3% 97.4%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 44.0 3.76e-01 93.8% 79.4%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 4.08e-01 93.8% 84.0%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 4.31e-01 93.1% 90.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970312 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.80 77.0 7.05e-01 100.0% 97.8%
3980468 5084.1.1.9 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.76 72.0 6.83e-01 99.3% 93.9%
4042627 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.74 71.0 6.65e-01 100.0% 98.8%
4437932 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 58.0 4.39e-01 94.4% 89.4%
4304754 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 57.0 4.40e-01 92.4% 90.5%
4669372 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.65 57.0 4.36e-01 93.1% 91.3%
3976237 5084.6.1.1 beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.63 58.0 4.97e-01 99.3% 100.0%
4008544 5084.6.1.1 beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.62 57.0 4.88e-01 100.0% 100.0%
3371614 5084.1.1.27 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2921_N 0.62 58.0 5.69e-01 100.0% 94.8%
3941832 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.62 48.0 3.49e-01 79.9% 62.1%
3964155 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.62 56.0 4.63e-01 99.3% 99.2%
3969607 5084.1.1.11 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.61 56.0 4.35e-01 100.0% 95.6%
1568816 5084.1.1.11 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.61 55.0 4.51e-01 98.6% 97.0%
3970589 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.61 55.0 4.07e-01 95.1% 98.5%
3839997 5084.5.4.1 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.61 54.0 3.89e-01 97.2% 94.9%
4450761 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 56.0 4.22e-01 100.0% 81.6%
4490044 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 54.0 4.31e-01 97.2% 91.2%
4027955 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.60 54.0 3.98e-01 96.5% 97.8%
3387368 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.60 54.0 4.46e-01 100.0% 97.0%
3330367 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.59 53.0 4.89e-01 97.9% 88.6%
1558583 5084.5.4.2 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › CymA 0.59 50.0 3.88e-01 90.3% 90.5%
3824904 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.59 53.0 4.00e-01 95.8% 98.2%
3963279 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.59 54.0 4.11e-01 96.5% 96.8%
2103480 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.59 54.0 4.27e-01 100.0% 93.1%
3213938 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.59 55.0 4.55e-01 100.0% 76.7%
3969394 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.58 53.0 3.90e-01 97.2% 95.6%
3465157 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 52.0 3.87e-01 96.5% 94.4%
3975037 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.58 51.0 3.60e-01 94.4% 96.6%
3980621 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.57 51.0 4.48e-01 97.9% 98.1%
3978947 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.57 50.0 3.68e-01 95.8% 50.9%
3726881 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.57 53.0 4.88e-01 100.0% 92.2%
4622073 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.57 50.0 3.84e-01 95.1% 57.2%
4162922 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.57 51.0 3.99e-01 99.3% 91.3%
4191031 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.56 50.0 3.99e-01 100.0% 89.7%
3594654 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.56 49.0 3.59e-01 93.1% 96.8%
3511259 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 50.0 3.89e-01 95.1% 60.3%
4618904 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.56 50.0 3.62e-01 95.8% 48.4%
3379458 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.56 49.0 3.72e-01 94.4% 96.4%
4522601 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.55 49.0 3.65e-01 95.8% 48.3%
4885978 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.55 48.0 3.71e-01 95.1% 97.0%
3611705 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.55 50.0 3.66e-01 97.9% 57.0%
4339571 5084.5.4.0 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein 0.54 49.0 3.49e-01 99.3% 65.4%
4023996 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.54 44.0 4.07e-01 86.1% 93.3%
4679157 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.54 47.0 3.48e-01 95.1% 93.9%
4371754 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.54 46.0 3.12e-01 95.1% 97.4%
4416793 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.53 47.0 3.43e-01 96.5% 43.2%
3964588 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.53 48.0 3.69e-01 96.5% 53.8%
4533056 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.53 47.0 3.38e-01 96.5% 39.5%
4527549 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.53 46.0 3.53e-01 95.8% 94.8%
4049663 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.53 44.0 3.12e-01 88.2% 90.6%
4241280 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 44.0 3.10e-01 89.6% 85.1%
4500128 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 44.0 3.07e-01 90.3% 91.6%
3595544 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.52 41.0 3.29e-01 92.4% 42.2%
3981844 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.04e-01 89.6% 84.7%
3980013 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 43.0 3.10e-01 89.6% 85.1%
4403655 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 43.0 3.04e-01 89.6% 91.0%
4008074 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 43.0 3.02e-01 90.3% 92.0%
3945644 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 43.0 3.02e-01 89.6% 90.6%
4349091 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 43.0 3.06e-01 88.9% 84.4%
3980456 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 42.0 3.01e-01 90.3% 91.7%
3803010 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.51 47.0 3.83e-01 98.6% 73.7%
3973457 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 42.0 2.92e-01 87.5% 84.3%
3942540 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 42.0 2.91e-01 88.2% 91.1%
4281349 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.50 42.0 3.01e-01 88.9% 85.2%
3229636 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.50 43.0 3.95e-01 91.0% 89.2%
3489191 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.50 36.0 2.85e-01 95.1% 36.5%
3946102 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.50 42.0 3.02e-01 90.3% 92.4%
5061892 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 44.0 3.72e-01 96.5% 75.5%
3945603 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.50 42.0 2.93e-01 88.9% 85.8%