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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00137
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00137
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-126
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.65 | 52.0 | 5.24e-01 | 96.3% | 85.2% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.64 | 49.0 | 4.80e-01 | 89.0% | 75.7% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.63 | 45.0 | 4.18e-01 | 73.4% | 97.0% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 29.0 | 3.03e-01 | 82.6% | 45.1% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 51.0 | 4.21e-01 | 90.8% | 89.5% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 50.0 | 4.06e-01 | 89.9% | 90.3% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.60 | 43.0 | 4.54e-01 | 89.0% | 84.4% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.59 | 44.0 | 4.80e-01 | 83.5% | 94.4% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 41.0 | 3.83e-01 | 70.6% | 81.3% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 49.0 | 4.19e-01 | 89.9% | 90.2% |
| 1p5dX04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.58 | 43.0 | 4.56e-01 | 89.0% | 91.4% |
| 3rjuA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 41.0 | 2.93e-01 | 75.2% | 89.2% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 41.0 | 3.91e-01 | 73.4% | 79.7% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 39.0 | 3.67e-01 | 70.6% | 81.5% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 39.0 | 3.69e-01 | 70.6% | 82.7% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.57 | 47.0 | 4.64e-01 | 88.1% | 98.2% |
| 3v7bA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.56 | 39.0 | 3.54e-01 | 70.6% | 72.8% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.56 | 42.0 | 4.61e-01 | 87.2% | 100.0% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.56 | 45.0 | 3.94e-01 | 88.1% | 89.8% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 40.0 | 2.89e-01 | 75.2% | 92.2% |
| 5ctnA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 39.0 | 3.09e-01 | 74.3% | 86.7% |
| 1e50B00 | 2.40.250.10 | Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit | 0.55 | 38.0 | 3.64e-01 | 72.5% | 78.5% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 39.0 | 3.65e-01 | 74.3% | 86.8% |
| 1d1jB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 38.0 | 3.59e-01 | 73.4% | 76.5% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 38.0 | 2.89e-01 | 74.3% | 85.2% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 35.0 | 3.25e-01 | 80.7% | 52.9% |
| 2z0fA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 44.0 | 4.55e-01 | 89.0% | 100.0% |
| 3hxiA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.53 | 48.0 | 4.13e-01 | 99.1% | 87.7% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 38.0 | 2.97e-01 | 76.1% | 85.5% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 38.0 | 2.72e-01 | 76.1% | 91.3% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.87e-01 | 78.0% | 90.7% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 38.0 | 3.70e-01 | 75.2% | 70.6% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.70e-01 | 78.0% | 88.2% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 37.0 | 3.60e-01 | 73.4% | 70.6% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.51 | 37.0 | 4.11e-01 | 86.2% | 96.4% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 45.0 | 3.89e-01 | 98.2% | 83.2% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 36.0 | 2.90e-01 | 75.2% | 90.5% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 28.0 | 3.45e-01 | 77.1% | 87.9% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.50 | 36.0 | 3.39e-01 | 74.3% | 66.2% |
| 4hesA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 36.0 | 2.78e-01 | 75.2% | 85.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3401778 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.65 | 46.0 | 4.86e-01 | 89.9% | 84.2% |
| 3704834 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.64 | 47.0 | 4.94e-01 | 89.9% | 88.4% |
| 4979564 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.61 | 39.0 | 4.69e-01 | 86.2% | 100.0% |
| 3512817 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.61 | 47.0 | 4.51e-01 | 98.2% | 71.2% |
| 2755883 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.61 | 44.0 | 4.78e-01 | 88.1% | 90.2% |
| 3388799 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 50.0 | 4.19e-01 | 89.0% | 85.9% |
| 4996503 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 51.0 | 4.18e-01 | 89.9% | 85.8% |
| 3846916 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.60 | 54.0 | 5.35e-01 | 100.0% | 93.9% |
| 3289282 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.60 | 43.0 | 3.09e-01 | 75.2% | 63.0% |
| 5016100 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 50.0 | 4.17e-01 | 89.9% | 90.3% |
| 4510748 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.59 | 50.0 | 4.28e-01 | 92.7% | 91.4% |
| 3817626 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.58 | 42.0 | 3.54e-01 | 73.4% | 70.0% |
| 3955307 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.58 | 40.0 | 3.45e-01 | 70.6% | 86.8% |
| 3702063 | 331.9.1.5 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf | 0.58 | 50.0 | 5.04e-01 | 98.2% | 95.4% |
| 3392728 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.58 | 52.0 | 4.99e-01 | 100.0% | 88.0% |
| 3960286 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.58 | 43.0 | 4.68e-01 | 89.9% | 100.0% |
| 4046583 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.57 | 39.0 | 3.75e-01 | 70.6% | 84.6% |
| 5019858 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.57 | 39.0 | 3.65e-01 | 70.6% | 78.6% |
| 4614038 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.57 | 39.0 | 3.69e-01 | 70.6% | 82.7% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 44.0 | 4.74e-01 | 88.1% | 100.0% |
| 3710275 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 48.0 | 3.75e-01 | 99.1% | 42.1% |
| 4004064 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 48.0 | 4.56e-01 | 95.4% | 85.9% |
| 5012336 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.56 | 45.0 | 3.88e-01 | 86.2% | 86.7% |
| 3701279 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.56 | 41.0 | 4.33e-01 | 90.8% | 87.4% |
| 3283279 | 881.1.1.15 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 | 0.56 | 41.0 | 3.88e-01 | 76.1% | 73.1% |
| 3280283 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.56 | 40.0 | 2.81e-01 | 74.3% | 84.9% |
| 2557239 | 223.2.1.17 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 | 0.56 | 40.0 | 3.65e-01 | 73.4% | 70.5% |
| 4928736 | 331.19.1.0 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains | 0.56 | 46.0 | 4.27e-01 | 89.9% | 78.6% |
| 5020831 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.55 | 38.0 | 3.65e-01 | 70.6% | 77.6% |
| 136368 | 9.1.1.18 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ApoM | 0.55 | 49.0 | 4.22e-01 | 98.2% | 84.7% |
| 3815659 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.55 | 39.0 | 3.55e-01 | 73.4% | 68.2% |
| 3484746 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.55 | 45.0 | 4.53e-01 | 90.8% | 90.9% |
| 5079718 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 44.0 | 4.44e-01 | 90.8% | 89.1% |
| 5035552 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 40.0 | 3.05e-01 | 78.0% | 98.4% |
| 4957009 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.53 | 42.0 | 4.14e-01 | 87.2% | 79.2% |
| 4216191 | 3844.1.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C | 0.53 | 34.0 | 3.45e-01 | 74.3% | 65.7% |
| 3607579 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 43.0 | 4.29e-01 | 90.8% | 99.1% |
| 4951147 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.52 | 36.0 | 3.53e-01 | 70.6% | 73.3% |
| 1063623 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 35.0 | 3.20e-01 | 81.7% | 53.2% |
| 4965055 | 223.2.1.63 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 | 0.52 | 37.0 | 3.52e-01 | 75.2% | 69.6% |
| 3225336 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 37.0 | 3.37e-01 | 73.4% | 73.8% |
| 5051699 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.51 | 41.0 | 4.17e-01 | 87.2% | 87.3% |
| 2516680 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.51 | 36.0 | 2.59e-01 | 74.3% | 79.1% |
| 4933596 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.51 | 41.0 | 3.94e-01 | 87.2% | 76.8% |
| 3554160 | 5.1.4.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP | 0.50 | 38.0 | 2.71e-01 | 79.8% | 97.6% |
| 5072402 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.50 | 36.0 | 3.46e-01 | 74.3% | 68.8% |