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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00220
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00220
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-187
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 31.9 | 2.30e-07 | 61.4% | 93.9% |
D2
high
residues 193-243
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ephA02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.71 | 55.0 | 4.91e-01 | 98.0% | 59.7% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.71 | 56.0 | 4.34e-01 | 92.2% | 68.5% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.68 | 49.0 | 3.21e-01 | 76.5% | 43.4% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 48.0 | 4.91e-01 | 86.3% | 91.7% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.62 | 50.0 | 4.22e-01 | 92.2% | 78.3% |
| 3hv0A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 49.0 | 3.83e-01 | 90.2% | 44.6% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 42.0 | 3.48e-01 | 76.5% | 87.1% |
| 1kxpD01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 41.0 | 3.62e-01 | 76.5% | 60.5% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 47.0 | 4.61e-01 | 90.2% | 85.5% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.58 | 44.0 | 3.64e-01 | 84.3% | 86.0% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.56 | 41.0 | 3.32e-01 | 86.3% | 79.1% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 2.92e-01 | 92.2% | 32.3% |
| 1aa6A03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.54 | 43.0 | 2.99e-01 | 94.1% | 98.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020945 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 62.0 | 5.57e-01 | 100.0% | 84.0% |
| 3588478 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.73 | 56.0 | 5.72e-01 | 88.2% | 91.7% |
| 4955070 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 59.0 | 5.60e-01 | 100.0% | 83.1% |
| 4517001 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.70 | 56.0 | 5.71e-01 | 90.2% | 96.0% |
| 3589739 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 57.0 | 4.37e-01 | 94.1% | 41.6% |
| 4883305 | 7061.1.1.1 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 | 0.70 | 55.0 | 4.85e-01 | 90.2% | 73.4% |
| 4928147 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.69 | 57.0 | 4.69e-01 | 100.0% | 99.0% |
| 3913691 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.65 | 45.0 | 3.20e-01 | 72.5% | 32.3% |
| 4110198 | 103.14.1.1 ↗ | alpha arrays › RuvA-C › DnaT DNA-binding domain › DnaT DNA-binding domain › DnaT | 0.63 | 50.0 | 4.25e-01 | 94.1% | 64.9% |
| 4077605 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 48.0 | 4.72e-01 | 94.1% | 79.7% |
| 3658835 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 47.0 | 3.75e-01 | 90.2% | 63.3% |
| 3919392 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.58 | 43.0 | 3.27e-01 | 76.5% | 43.3% |
| 5077445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 2.68e-01 | 72.5% | 69.9% |
D3
medium
residues 261-340
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mbmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 48.0 | 5.09e-01 | 78.8% | 93.1% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.63 | 45.0 | 3.51e-01 | 73.8% | 39.0% |
| 5fahA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 42.0 | 3.75e-01 | 71.2% | 82.9% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.96e-01 | 97.5% | 97.1% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 47.0 | 3.85e-01 | 97.5% | 94.2% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 46.0 | 3.96e-01 | 97.5% | 96.3% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.54 | 37.0 | 3.13e-01 | 80.0% | 39.0% |
| 3p02A02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.53 | 45.0 | 3.71e-01 | 98.8% | 82.6% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.76e-01 | 96.2% | 92.5% |
| 1dpeA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 34.0 | 3.04e-01 | 98.8% | 45.4% |
| 2n1hA00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.51 | 37.0 | 3.59e-01 | 82.5% | 67.0% |
| 3qmfA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.50 | 36.0 | 3.21e-01 | 80.0% | 74.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517030 | 4.1.1.232 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 | 0.68 | 46.0 | 4.81e-01 | 70.0% | 89.3% |
| 3180573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 4.59e-01 | 76.2% | 78.9% |
| 3598271 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 43.0 | 3.31e-01 | 73.8% | 30.6% |
| 3340900 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 42.0 | 4.60e-01 | 73.8% | 78.5% |
| 3457163 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 43.0 | 4.36e-01 | 70.0% | 68.8% |
| 4266110 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.63 | 42.0 | 4.52e-01 | 72.5% | 78.6% |
| 3885050 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.61 | 42.0 | 3.19e-01 | 71.2% | 32.0% |
| 3829476 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 45.0 | 3.44e-01 | 77.5% | 42.9% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 41.0 | 4.12e-01 | 70.0% | 77.5% |
| 3265819 | 4.1.1.224 ↗ | beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C | 0.60 | 41.0 | 3.70e-01 | 71.2% | 57.3% |
| 3642926 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 44.0 | 3.34e-01 | 77.5% | 40.0% |
| 3853596 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.58 | 43.0 | 3.67e-01 | 78.8% | 73.1% |
| 3373298 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.58 | 43.0 | 3.05e-01 | 77.5% | 62.1% |
| 3658643 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.57 | 43.0 | 3.54e-01 | 80.0% | 69.0% |
| 3505947 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.57 | 42.0 | 3.73e-01 | 78.8% | 79.2% |
| 3586559 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 38.0 | 3.76e-01 | 70.0% | 85.9% |
| 5030199 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.56 | 42.0 | 2.89e-01 | 82.5% | 29.5% |
| 3959805 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 43.0 | 4.07e-01 | 95.0% | 94.0% |
| 3695780 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 38.0 | 3.90e-01 | 88.7% | 77.5% |
| 3282498 | 223.1.1.37 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N | 0.52 | 40.0 | 3.83e-01 | 85.0% | 97.9% |
| 5037569 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.52 | 38.0 | 2.99e-01 | 81.2% | 55.4% |