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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00233

Bact-Vir

RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00233

Identity

Kingdom:
phage

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-116
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03330.25 best DPBB_1 53.9 2.40e-14 96.7% 95.2%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.91 87.0 8.55e-01 100.0% 97.9%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.88 84.0 7.95e-01 100.0% 95.2%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.88 83.0 7.71e-01 100.0% 91.7%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.79 53.0 6.17e-01 100.0% 95.4%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.79 74.0 5.55e-01 100.0% 47.8%
3czbA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.79 74.0 5.85e-01 100.0% 55.3%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 64.0 6.73e-01 100.0% 96.3%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 66.0 6.88e-01 100.0% 97.6%
2ae0X01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.78 72.0 5.62e-01 100.0% 56.1%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.77 70.0 6.23e-01 100.0% 93.6%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 64.0 6.30e-01 100.0% 84.4%
1h0hA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 69.0 5.43e-01 100.0% 73.3%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 60.0 5.71e-01 100.0% 73.6%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 52.0 5.18e-01 72.2% 72.5%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.74 60.0 6.25e-01 100.0% 94.0%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.73 67.0 6.19e-01 100.0% 100.0%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.70 63.0 5.22e-01 100.0% 79.9%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.69 62.0 5.97e-01 100.0% 91.3%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.68 63.0 6.13e-01 100.0% 98.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.67 62.0 5.24e-01 100.0% 73.2%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 44.0 4.48e-01 100.0% 71.6%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 45.0 4.50e-01 100.0% 73.6%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 40.0 4.12e-01 100.0% 71.6%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 34.0 3.11e-01 100.0% 43.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.58 47.0 4.28e-01 88.9% 85.1%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.46e-01 95.6% 54.7%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 46.0 3.91e-01 90.0% 74.3%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 28.0 3.32e-01 83.3% 68.3%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.56 33.0 3.31e-01 95.6% 57.8%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.54 34.0 3.56e-01 100.0% 68.2%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 47.0 4.66e-01 100.0% 96.8%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.53 38.0 4.09e-01 100.0% 91.9%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 4.43e-01 100.0% 96.2%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 4.33e-01 100.0% 99.0%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.61e-01 97.8% 74.7%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.57e-01 98.9% 74.4%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419943 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.93 89.0 8.54e-01 100.0% 92.0%
4880811 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.93 68.0 7.50e-01 75.6% 100.0%
3165363 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.92 89.0 6.98e-01 100.0% 55.8%
4370157 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.91 87.0 7.26e-01 100.0% 66.4%
3974469 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.91 87.0 8.56e-01 100.0% 96.8%
3187650 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.91 87.0 7.86e-01 100.0% 93.0%
4299713 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 85.0 8.04e-01 100.0% 93.3%
4396535 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 72.0 7.64e-01 100.0% 93.8%
3274054 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.90 85.0 7.59e-01 100.0% 83.3%
3720989 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.89 85.0 7.80e-01 100.0% 91.8%
3264281 1.1.2.33 beta barrels › cradle loop barrel › RIFT-related › double psi › PF29515 0.88 84.0 7.25e-01 100.0% 81.5%
3726745 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.88 83.0 7.88e-01 100.0% 97.1%
4243381 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.88 83.0 8.00e-01 98.9% 93.9%
4115281 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.88 83.0 7.48e-01 100.0% 94.1%
349867 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.88 83.0 7.59e-01 100.0% 88.4%
3277741 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.88 83.0 7.55e-01 100.0% 81.7%
3976753 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.87 83.0 6.80e-01 100.0% 60.0%
4500954 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.86 63.0 6.87e-01 100.0% 90.7%
3426007 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.86 82.0 7.17e-01 100.0% 84.8%
3010131 1.1.2.9 beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.86 82.0 7.64e-01 100.0% 91.6%
4412522 1.1.2.3 beta barrels › cradle loop barrel › RIFT-related › double psi › Barwin 0.83 79.0 6.52e-01 100.0% 79.1%
4445483 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.80 69.0 7.16e-01 100.0% 96.5%
5028227 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 71.0 7.31e-01 100.0% 98.8%
4205030 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 69.0 7.15e-01 100.0% 96.5%
4200720 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 69.0 7.14e-01 100.0% 96.5%
4931749 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 69.0 7.12e-01 100.0% 96.5%
4488210 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.80 68.0 7.05e-01 100.0% 95.3%
4981335 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 69.0 7.08e-01 100.0% 96.5%
5069203 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 69.0 6.99e-01 100.0% 92.2%
4986590 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 68.0 7.00e-01 100.0% 95.3%
5041263 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 68.0 7.03e-01 100.0% 96.5%
4586145 1.1.2.3 beta barrels › cradle loop barrel › RIFT-related › double psi › Barwin 0.79 69.0 6.63e-01 91.1% 97.0%
4526788 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.79 67.0 7.05e-01 100.0% 100.0%
4963913 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 64.0 6.79e-01 100.0% 96.2%
5055583 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 68.0 7.05e-01 100.0% 97.6%
4941448 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 67.0 6.97e-01 100.0% 96.5%
5076635 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 67.0 6.96e-01 100.0% 96.5%
5060218 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 69.0 7.08e-01 100.0% 98.8%
5045002 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 66.0 6.68e-01 100.0% 90.0%
5053173 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 66.0 6.46e-01 100.0% 84.2%
5053341 1.1.2.7 beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.78 70.0 6.72e-01 100.0% 86.0%
5053174 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 65.0 6.58e-01 100.0% 88.9%
5054391 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 66.0 6.81e-01 100.0% 95.3%
5060583 1.1.2.7 beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.78 66.0 6.86e-01 100.0% 96.5%
5073963 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 64.0 6.63e-01 97.8% 92.9%
4970929 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 66.0 6.83e-01 100.0% 96.5%
5074983 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 65.0 6.57e-01 100.0% 90.0%
5074694 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 64.0 5.43e-01 97.8% 56.4%
3332068 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 72.0 5.89e-01 100.0% 99.4%
3180055 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 72.0 5.71e-01 100.0% 55.6%
4938514 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 66.0 6.79e-01 98.9% 96.5%
3828556 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 72.0 6.09e-01 100.0% 94.3%
4946804 1.1.2.44 beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N 0.77 66.0 6.78e-01 100.0% 96.5%
3602941 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 65.0 6.67e-01 100.0% 95.3%
1883479 1.1.2.7 beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 66.0 6.62e-01 100.0% 92.2%
4263053 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 65.0 6.66e-01 100.0% 96.5%
3783660 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 68.0 6.53e-01 100.0% 87.0%
4970084 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 65.0 6.68e-01 98.9% 98.8%
3463336 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 70.0 6.72e-01 100.0% 95.0%
4639326 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.70e-01 100.0% 71.8%
5001338 1.1.2.7 beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.74 65.0 6.42e-01 100.0% 89.5%
4122334 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.21e-01 100.0% 56.4%
4087090 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.27e-01 100.0% 58.5%
4245831 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.21e-01 100.0% 56.4%
4040376 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.34e-01 100.0% 60.8%
3477728 1.1.2.19 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.74 65.0 6.44e-01 100.0% 90.5%
3557903 1.1.2.19 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.74 65.0 6.39e-01 100.0% 89.5%
3735360 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 68.0 6.36e-01 100.0% 90.9%
3688059 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 68.0 5.49e-01 100.0% 75.2%
4145927 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.74 61.0 5.25e-01 100.0% 58.5%
4030729 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.74 69.0 6.49e-01 100.0% 93.3%
4669978 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 60.0 5.48e-01 100.0% 66.4%
4485138 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.73 60.0 5.36e-01 100.0% 63.2%
3412967 1.1.2.19 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.73 65.0 6.59e-01 100.0% 96.7%
4890564 101.1.2.869 alpha arrays › HTH › HTH › winged helix domain › IML1_N 0.73 59.0 6.16e-01 97.8% 95.1%
3169042 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 65.0 6.31e-01 100.0% 87.0%
4021338 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 67.0 6.51e-01 100.0% 93.0%
4357009 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 64.0 6.60e-01 98.9% 100.0%
4200338 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 67.0 6.31e-01 100.0% 91.4%
4405973 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 65.0 6.39e-01 100.0% 91.6%
5008659 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.72 65.0 5.54e-01 97.8% 92.1%
4027672 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.72 66.0 6.26e-01 100.0% 85.7%
3391397 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 58.0 5.81e-01 100.0% 91.1%
4048983 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 63.0 5.97e-01 100.0% 92.4%
3180110 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.68 60.0 5.53e-01 93.3% 85.5%
4864011 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.62 56.0 5.31e-01 100.0% 84.8%
5055294 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 40.0 4.15e-01 100.0% 75.3%
3817523 11.1.4.55 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.57 36.0 3.33e-01 96.7% 48.3%
5059037 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 36.0 3.69e-01 95.6% 67.1%
3999787 11.1.4.98 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_NOMO 0.56 31.0 3.31e-01 85.6% 60.0%
4968580 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 4.33e-01 95.6% 100.0%