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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00262
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00262
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-75
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 35.0 | 3.44e-01 | 81.7% | 50.6% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.61 | 33.0 | 2.89e-01 | 78.9% | 33.3% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 44.0 | 3.76e-01 | 80.3% | 71.2% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 44.0 | 3.97e-01 | 80.3% | 65.3% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.58 | 33.0 | 2.82e-01 | 78.9% | 33.3% |
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.57 | 29.0 | 3.09e-01 | 71.8% | 50.0% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 42.0 | 3.72e-01 | 80.3% | 76.2% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 42.0 | 3.47e-01 | 80.3% | 70.5% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 42.0 | 3.71e-01 | 81.7% | 67.9% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 41.0 | 3.72e-01 | 80.3% | 70.1% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 40.0 | 2.66e-01 | 83.1% | 18.7% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 35.0 | 3.30e-01 | 83.1% | 52.8% |
| 6k2lA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 39.0 | 3.42e-01 | 80.3% | 72.1% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.50 | 32.0 | 3.52e-01 | 78.9% | 85.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3185246 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 38.0 | 3.03e-01 | 80.3% | 29.2% |
| 3509084 | 5.1.10.10 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Vps16_N | 0.69 | 41.0 | 4.14e-01 | 78.9% | 60.0% |
| 3743579 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.68 | 45.0 | 2.91e-01 | 100.0% | 15.7% |
| 3463325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 43.0 | 2.95e-01 | 100.0% | 19.2% |
| 3598725 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 34.0 | 2.48e-01 | 76.1% | 18.5% |
| 3263885 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.58 | 38.0 | 2.43e-01 | 93.0% | 13.5% |
| 4017814 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 38.0 | 3.29e-01 | 70.4% | 66.1% |
| 1124190 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.57 | 29.0 | 3.09e-01 | 71.8% | 50.0% |
| 5017300 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.56 | 42.0 | 3.48e-01 | 78.9% | 84.2% |
| 4046880 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 44.0 | 4.15e-01 | 88.7% | 78.9% |
| 4029991 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 39.0 | 2.45e-01 | 83.1% | 13.5% |
| 5067782 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 32.0 | 3.27e-01 | 78.9% | 57.1% |
| 3468128 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 39.0 | 2.56e-01 | 83.1% | 16.9% |
| 1562389 | 3308.2.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein | 0.54 | 42.0 | 2.98e-01 | 100.0% | 28.7% |
| 3330850 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.52 | 36.0 | 3.21e-01 | 71.8% | 55.0% |
| 4954309 | 2.1.1.375 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MJ0548_C | 0.51 | 32.0 | 3.06e-01 | 78.9% | 50.0% |
| 3286818 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 35.0 | 2.86e-01 | 71.8% | 77.5% |
| 3659103 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.50 | 28.0 | 3.15e-01 | 76.1% | 72.0% |
| 3662052 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.50 | 28.0 | 2.68e-01 | 77.5% | 43.5% |