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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00315
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00315
Identity
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-93
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 55.0 | 3.96e-01 | 79.2% | 30.5% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.73 | 51.0 | 4.24e-01 | 75.5% | 70.2% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.71 | 50.0 | 4.50e-01 | 73.6% | 62.5% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 49.0 | 4.15e-01 | 81.1% | 73.9% |
| 4hi8B00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 46.0 | 4.18e-01 | 77.4% | 66.7% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.62 | 39.0 | 4.15e-01 | 71.7% | 76.7% |
| 3purA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 46.0 | 4.18e-01 | 81.1% | 66.2% |
| 2lxhC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 4.27e-01 | 77.4% | 93.1% |
| 2rowA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.60 | 41.0 | 3.81e-01 | 71.7% | 59.2% |
| 5eyaF00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 40.0 | 3.63e-01 | 71.7% | 71.1% |
| 1wffA00 | 4.10.1110.10 | Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger | 0.56 | 42.0 | 3.66e-01 | 81.1% | 54.1% |
| 5dkaA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 41.0 | 3.43e-01 | 79.2% | 43.8% |
| 2miuA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.56 | 42.0 | 3.56e-01 | 84.9% | 63.3% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 39.0 | 4.01e-01 | 77.4% | 86.5% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930892 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.83 | 53.0 | 5.73e-01 | 75.5% | 77.8% |
| 4998890 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.82 | 51.0 | 5.52e-01 | 73.6% | 75.6% |
| 3608274 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.80 | 55.0 | 5.46e-01 | 73.6% | 69.1% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.80 | 54.0 | 5.09e-01 | 71.7% | 72.3% |
| 3928956 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.79 | 57.0 | 5.70e-01 | 77.4% | 96.4% |
| 5061253 | 376.1.3.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 | 0.78 | 55.0 | 4.69e-01 | 73.6% | 50.0% |
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.75 | 56.0 | 5.21e-01 | 79.2% | 73.8% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.75 | 53.0 | 4.56e-01 | 73.6% | 72.5% |
| 3576409 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 52.0 | 5.20e-01 | 73.6% | 81.8% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 54.0 | 4.50e-01 | 77.4% | 66.7% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.74 | 52.0 | 4.39e-01 | 73.6% | 74.1% |
| 4442858 | 931.1.1.15 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 | 0.74 | 47.0 | 5.38e-01 | 71.7% | 97.1% |
| 3326051 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.74 | 53.0 | 4.30e-01 | 75.5% | 67.4% |
| 3692487 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.74 | 57.0 | 4.57e-01 | 83.0% | 61.0% |
| 3766800 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 52.0 | 5.13e-01 | 73.6% | 74.5% |
| 3269935 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.73 | 60.0 | 4.74e-01 | 90.6% | 64.5% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 53.0 | 5.24e-01 | 77.4% | 80.0% |
| 3592068 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 53.0 | 5.14e-01 | 77.4% | 70.7% |
| 3736484 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 52.0 | 4.21e-01 | 75.5% | 56.8% |
| 3235465 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 50.0 | 4.93e-01 | 71.7% | 83.6% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.72 | 52.0 | 4.16e-01 | 75.5% | 63.0% |
| 5066402 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 52.0 | 4.75e-01 | 75.5% | 92.6% |
| 3482300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.72 | 50.0 | 4.27e-01 | 73.6% | 74.1% |
| 3828987 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 54.0 | 4.41e-01 | 81.1% | 68.4% |
| 4024032 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 49.0 | 4.21e-01 | 73.6% | 76.5% |
| 3263160 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.71 | 55.0 | 4.39e-01 | 84.9% | 67.6% |
| 3717337 | 376.1.1.165 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE | 0.71 | 55.0 | 4.94e-01 | 84.9% | 86.7% |
| 3259913 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 50.0 | 4.46e-01 | 75.5% | 80.0% |
| 4957186 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 50.0 | 5.12e-01 | 75.5% | 98.0% |
| 3431026 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.69 | 53.0 | 4.32e-01 | 81.1% | 67.4% |
| 3342185 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 54.0 | 4.51e-01 | 86.8% | 71.6% |
| 3250498 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 52.0 | 4.22e-01 | 81.1% | 65.0% |
| 3876888 | 376.1.1.102 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 | 0.68 | 52.0 | 4.06e-01 | 83.0% | 61.7% |
| 2103529 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.68 | 50.0 | 4.07e-01 | 79.2% | 65.7% |
| 3684391 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.68 | 52.0 | 4.38e-01 | 83.0% | 72.2% |
| 3503676 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 47.0 | 4.81e-01 | 73.6% | 100.0% |
| 3380766 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.67 | 51.0 | 4.10e-01 | 81.1% | 68.0% |
| 4998314 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 47.0 | 4.50e-01 | 73.6% | 73.3% |
| 3796017 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 51.0 | 4.55e-01 | 83.0% | 74.7% |
| 3700533 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 51.0 | 3.24e-01 | 83.0% | 21.9% |
| 3726465 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.66 | 53.0 | 5.04e-01 | 90.6% | 83.1% |
| 3176238 | 376.1.2.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF27641 | 0.65 | 51.0 | 3.44e-01 | 84.9% | 25.0% |
| 3255227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.64 | 53.0 | 4.36e-01 | 90.6% | 74.7% |
| 8118 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.63 | 46.0 | 3.93e-01 | 79.2% | 79.8% |
| 4303131 | 376.1.1.93 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N | 0.59 | 48.0 | 3.50e-01 | 90.6% | 38.4% |
| 160874 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.58 | 44.0 | 4.09e-01 | 84.9% | 80.3% |
| 3489435 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 46.0 | 4.23e-01 | 90.6% | 84.3% |
| 3650976 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 44.0 | 3.83e-01 | 84.9% | 66.3% |
| 3251495 | 376.1.1.43 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C | 0.54 | 42.0 | 3.35e-01 | 90.6% | 91.2% |
| 3661081 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 34.0 | 3.31e-01 | 71.7% | 81.5% |