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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00317
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00317
Identity
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-88
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.70 | 35.0 | 3.95e-01 | 100.0% | 62.5% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 50.0 | 3.87e-01 | 82.4% | 48.1% |
| 3mepA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 44.0 | 3.46e-01 | 71.8% | 72.6% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 44.0 | 4.07e-01 | 87.1% | 57.4% |
| 3sb1A01 | 3.30.1370.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain | 0.62 | 44.0 | 4.20e-01 | 100.0% | 63.6% |
| 4ozxA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 43.0 | 2.96e-01 | 72.9% | 65.6% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 51.0 | 4.00e-01 | 96.5% | 100.0% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 41.0 | 3.25e-01 | 75.3% | 62.8% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 39.0 | 3.43e-01 | 72.9% | 80.7% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.57 | 46.0 | 4.59e-01 | 98.8% | 85.2% |
| 1qhwA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.57 | 45.0 | 3.10e-01 | 85.9% | 87.7% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 48.0 | 3.27e-01 | 100.0% | 97.9% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.55 | 50.0 | 3.83e-01 | 98.8% | 66.3% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 40.0 | 3.43e-01 | 78.8% | 90.9% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 42.0 | 3.85e-01 | 83.5% | 67.5% |
| 1jyaB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 39.0 | 3.48e-01 | 76.5% | 82.6% |
| 2f2hA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 43.0 | 3.16e-01 | 89.4% | 95.5% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 35.0 | 3.47e-01 | 72.9% | 62.9% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 44.0 | 3.40e-01 | 90.6% | 96.9% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 43.0 | 3.65e-01 | 90.6% | 99.3% |
| 1s4cC00 | 2.60.120.370 | Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL | 0.52 | 45.0 | 3.78e-01 | 96.5% | 80.3% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.52 | 43.0 | 4.06e-01 | 95.3% | 73.6% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 47.0 | 3.88e-01 | 98.8% | 76.2% |
| 3sojB00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.52 | 42.0 | 3.92e-01 | 95.3% | 94.8% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.50 | 42.0 | 3.33e-01 | 98.8% | 85.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1140832 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.72 | 39.0 | 4.59e-01 | 89.4% | 75.0% |
| 1171961 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.72 | 40.0 | 4.55e-01 | 90.6% | 73.0% |
| 4419937 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.71 | 43.0 | 4.31e-01 | 71.8% | 60.0% |
| 5044594 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.69 | 50.0 | 4.90e-01 | 84.7% | 71.1% |
| 3506427 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.67 | 42.0 | 3.70e-01 | 71.8% | 44.0% |
| 5037626 | 5.1.10.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 | 0.66 | 40.0 | 4.07e-01 | 83.5% | 60.0% |
| 5038443 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 42.0 | 4.47e-01 | 88.2% | 73.3% |
| 3929950 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.64 | 44.0 | 3.50e-01 | 71.8% | 67.6% |
| 3290823 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.64 | 46.0 | 4.92e-01 | 92.9% | 85.3% |
| 3703341 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.63 | 45.0 | 3.00e-01 | 75.3% | 83.5% |
| 4991564 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.63 | 51.0 | 4.15e-01 | 87.1% | 82.6% |
| 3743439 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.61 | 45.0 | 3.49e-01 | 77.6% | 41.6% |
| 5032150 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.61 | 53.0 | 3.53e-01 | 94.1% | 74.2% |
| 4171038 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.60 | 51.0 | 3.55e-01 | 92.9% | 81.1% |
| 4137850 | 9.1.1.9 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT | 0.60 | 43.0 | 3.37e-01 | 75.3% | 46.0% |
| 4979187 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.60 | 52.0 | 3.50e-01 | 95.3% | 74.5% |
| 5083611 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.59 | 52.0 | 3.57e-01 | 96.5% | 76.6% |
| 3229101 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.59 | 46.0 | 4.99e-01 | 88.2% | 97.3% |
| 4474202 | 809.1.1.7 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 | 0.59 | 44.0 | 4.59e-01 | 96.5% | 85.9% |
| 3225285 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.58 | 45.0 | 3.77e-01 | 83.5% | 76.7% |
| 4987280 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.58 | 50.0 | 3.50e-01 | 92.9% | 98.4% |
| 3580069 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 52.0 | 3.41e-01 | 100.0% | 93.1% |
| 2048183 | 10.1.1.50 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Dit-like_CBM2 | 0.57 | 44.0 | 3.22e-01 | 81.2% | 79.6% |
| 3743269 | 5.1.4.561 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CRT10 | 0.57 | 50.0 | 3.23e-01 | 100.0% | 94.5% |
| 63 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.57 | 39.0 | 3.43e-01 | 72.9% | 80.7% |
| 3266113 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.56 | 44.0 | 2.96e-01 | 83.5% | 91.1% |
| 3486202 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 43.0 | 2.69e-01 | 82.4% | 23.2% |
| 3933159 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 43.0 | 2.87e-01 | 82.4% | 37.6% |
| 3197369 | 5.1.3.154 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 | 0.55 | 40.0 | 2.54e-01 | 77.6% | 30.3% |
| 3401140 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.55 | 42.0 | 2.67e-01 | 81.2% | 25.3% |
| 5047088 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 42.0 | 3.10e-01 | 83.5% | 31.8% |
| 3794738 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 37.0 | 2.80e-01 | 70.6% | 37.4% |
| 3413293 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 3.16e-01 | 100.0% | 98.0% |
| 3591269 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 43.0 | 2.87e-01 | 84.7% | 23.4% |
| 5082492 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 44.0 | 4.47e-01 | 88.2% | 90.6% |
| 3625811 | 5.1.4.374 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_THOC3 | 0.52 | 44.0 | 3.06e-01 | 96.5% | 82.5% |
| 3260833 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.52 | 41.0 | 3.50e-01 | 87.1% | 68.3% |
| 3906480 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 44.0 | 3.09e-01 | 100.0% | 98.1% |
| 3575356 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 39.0 | 2.64e-01 | 83.5% | 25.6% |