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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00324

Bact-Vir

RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00324

Identity

Kingdom:
phage

Quality

96.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 55.0 5.84e-01 97.2% 76.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 53.0 5.69e-01 100.0% 78.1%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 5.10e-01 100.0% 51.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.86e-01 100.0% 89.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 60.0 6.07e-01 100.0% 86.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.79e-01 100.0% 83.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 4.47e-01 100.0% 52.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 56.0 5.03e-01 100.0% 60.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.32e-01 98.6% 76.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.90e-01 100.0% 90.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.42e-01 95.8% 90.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.38e-01 100.0% 56.2%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 51.0 4.52e-01 100.0% 56.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.78e-01 100.0% 58.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.54e-01 98.6% 87.1%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 3.96e-01 100.0% 44.1%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 4.76e-01 100.0% 61.1%
2xgjA05 2.40.30.300 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 58.0 4.72e-01 97.2% 73.8%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.41e-01 100.0% 50.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 57.0 4.46e-01 100.0% 52.7%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 56.0 5.05e-01 100.0% 85.3%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.07e-01 100.0% 53.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.43e-01 100.0% 80.0%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.60 54.0 4.41e-01 100.0% 57.9%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 55.0 4.25e-01 100.0% 53.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.04e-01 100.0% 54.5%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.59 45.0 2.94e-01 81.9% 74.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 55.0 4.26e-01 100.0% 55.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 5.30e-01 100.0% 100.0%
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.58 54.0 4.52e-01 100.0% 94.9%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.58 53.0 4.84e-01 100.0% 86.0%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 3.40e-01 70.8% 98.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.01e-01 100.0% 74.0%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 41.0 2.66e-01 80.6% 76.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 45.0 4.01e-01 94.4% 78.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 35.0 3.55e-01 100.0% 69.3%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.68e-01 79.2% 95.1%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 33.0 2.96e-01 84.7% 45.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.76e-01 94.4% 84.1%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 2.95e-01 81.9% 46.7%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.25e-01 80.6% 86.8%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575865 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.78 57.0 5.85e-01 100.0% 78.6%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.33e-01 100.0% 61.1%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 57.0 5.16e-01 100.0% 60.0%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.76 55.0 4.17e-01 100.0% 36.0%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 56.0 5.57e-01 100.0% 74.7%
3219406 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 43.0 5.06e-01 84.7% 82.0%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.75 56.0 5.51e-01 100.0% 74.7%
3441143 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.74 60.0 5.31e-01 100.0% 62.0%
3936726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.99e-01 100.0% 98.2%
3381754 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.73 59.0 4.89e-01 100.0% 51.7%
3317030 4.1.1.366 beta barrels › SH3 › SH3 › SH3 › PF26738 0.72 55.0 5.97e-01 100.0% 95.0%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 57.0 5.03e-01 100.0% 61.0%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.95e-01 100.0% 90.0%
4315769 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 60.0 5.10e-01 100.0% 59.1%
3638533 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.69 61.0 4.82e-01 100.0% 49.3%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.69 57.0 5.63e-01 100.0% 84.0%
3238991 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 54.0 4.32e-01 100.0% 45.0%
5061071 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 60.0 4.25e-01 100.0% 79.5%
3207682 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 4.50e-01 100.0% 47.9%
3609428 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.66 55.0 4.46e-01 100.0% 48.9%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 57.0 5.77e-01 100.0% 94.3%
3830352 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.65 60.0 5.67e-01 100.0% 83.5%
4295399 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 61.0 5.37e-01 100.0% 82.0%
5040639 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 58.0 4.47e-01 100.0% 66.3%
3615113 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.64 59.0 4.53e-01 100.0% 59.1%
3184389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 60.0 4.36e-01 100.0% 49.7%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.02e-01 100.0% 76.5%
3806777 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 53.0 5.28e-01 100.0% 86.7%
3715175 4.18.1.0 beta barrels › SH3 › Plus3 › Plus3 0.63 58.0 4.30e-01 100.0% 60.0%
3941087 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 58.0 5.04e-01 100.0% 69.5%
4516083 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.62 51.0 4.44e-01 100.0% 59.1%
4229837 4.1.1.354 beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.62 58.0 4.19e-01 100.0% 43.8%
3873627 4.1.1.354 beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.62 58.0 4.87e-01 100.0% 70.4%
4097843 4.11.1.6 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 0.62 57.0 4.30e-01 100.0% 55.6%
4002655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 57.0 4.48e-01 100.0% 64.3%
4013325 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 57.0 4.65e-01 100.0% 69.6%
3270538 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.61 54.0 4.52e-01 100.0% 61.6%
573 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 56.0 5.05e-01 100.0% 85.3%
3254941 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.61 56.0 4.54e-01 100.0% 56.2%
3489170 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 56.0 5.17e-01 98.6% 87.8%
3939175 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.61 56.0 4.34e-01 100.0% 48.7%
3498558 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.61 55.0 4.32e-01 100.0% 48.7%
3581942 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.61 57.0 4.40e-01 100.0% 57.9%
3997130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 57.0 5.00e-01 100.0% 85.0%
3411858 4.1.1.456 beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.61 53.0 3.21e-01 100.0% 16.2%
3738161 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.61 55.0 4.55e-01 100.0% 61.6%
3596973 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 53.0 3.92e-01 100.0% 44.6%
3637508 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 43.0 4.51e-01 97.2% 84.6%
3447437 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.60 55.0 4.41e-01 100.0% 56.3%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.69e-01 100.0% 71.4%
3381699 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 55.0 4.27e-01 100.0% 49.3%
4055111 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.59 55.0 4.49e-01 100.0% 65.6%
3218545 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 55.0 5.17e-01 100.0% 92.9%
3623159 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 55.0 4.61e-01 100.0% 64.3%
4025490 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.17e-01 100.0% 73.3%
3329012 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 53.0 4.12e-01 100.0% 48.4%
3881192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 54.0 4.00e-01 100.0% 41.8%
3668886 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.59 54.0 4.39e-01 100.0% 56.9%
3744811 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.59 54.0 4.14e-01 100.0% 49.0%
3837281 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 53.0 3.99e-01 100.0% 44.1%
3340613 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 36.0 3.49e-01 86.1% 55.0%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 49.0 4.82e-01 100.0% 86.3%
3594413 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 51.0 4.95e-01 100.0% 88.7%
5010640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.92e-01 80.6% 77.8%
3880750 370.1.1.3 few secondary structure elements › TB module/8-cys domain › TB module/8-cys domain › TB module/8-cys domain › TSR 0.56 36.0 4.12e-01 87.5% 96.0%
3249895 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 45.0 4.56e-01 95.8% 91.4%
3196565 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 48.0 3.13e-01 100.0% 26.0%
4131100 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.52 46.0 3.77e-01 100.0% 53.3%
3937857 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 34.0 3.28e-01 87.5% 58.8%
4050380 1.1.7.95 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.51 45.0 4.14e-01 100.0% 75.8%
3968190 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 39.0 3.57e-01 83.3% 98.9%
3386975 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 44.0 3.81e-01 100.0% 72.2%