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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00355
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00355
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-131
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08299.18 best | Bac_DnaA_C | 35.2 | 1.40e-08 | 53.3% | 89.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.89 | 64.0 | 7.24e-01 | 73.8% | 98.9% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.79 | 32.0 | 3.35e-01 | 86.1% | 41.4% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.78 | 57.0 | 6.10e-01 | 76.2% | 87.9% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 34.0 | 4.58e-01 | 80.3% | 92.3% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 4.25e-01 | 82.0% | 86.7% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.59 | 44.0 | 4.73e-01 | 78.7% | 99.0% |
| 2genA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 41.0 | 3.56e-01 | 73.0% | 72.3% |
| 1s7oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.12e-01 | 87.7% | 81.9% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 37.0 | 3.95e-01 | 75.4% | 84.0% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 36.0 | 3.13e-01 | 70.5% | 67.4% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 40.0 | 3.72e-01 | 85.2% | 64.5% |
| 3aqbA00 | 1.20.120.1450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 37.0 | 3.63e-01 | 82.8% | 66.7% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.51 | 28.0 | 2.71e-01 | 87.7% | 43.1% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.97e-01 | 85.2% | 82.3% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.88e-01 | 74.6% | 100.0% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.75e-01 | 84.4% | 70.2% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 44.0 | 4.55e-01 | 93.4% | 99.1% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.50 | 36.0 | 3.38e-01 | 74.6% | 99.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4051624 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 66.0 | 7.13e-01 | 75.4% | 90.5% |
| 4146099 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 65.0 | 7.30e-01 | 73.8% | 100.0% |
| 4106860 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 64.0 | 7.23e-01 | 73.8% | 97.9% |
| 4559046 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 66.0 | 7.12e-01 | 77.0% | 92.4% |
| 4270831 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 64.0 | 6.88e-01 | 74.6% | 89.5% |
| 4102935 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.88 | 64.0 | 6.87e-01 | 74.6% | 89.5% |
| 4266587 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.87 | 62.0 | 7.01e-01 | 73.8% | 97.9% |
| 4606821 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.87 | 62.0 | 6.86e-01 | 73.8% | 95.0% |
| 3385990 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 65.0 | 6.95e-01 | 77.0% | 92.4% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 63.0 | 6.95e-01 | 75.4% | 95.0% |
| 4197050 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 66.0 | 7.15e-01 | 79.5% | 93.3% |
| 4281674 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 66.0 | 7.12e-01 | 79.5% | 94.3% |
| 4604979 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.86 | 62.0 | 6.67e-01 | 73.8% | 88.5% |
| 4529157 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.85 | 60.0 | 6.88e-01 | 71.3% | 100.0% |
| 4601417 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.85 | 61.0 | 6.92e-01 | 73.8% | 97.9% |
| 4524648 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.85 | 61.0 | 6.55e-01 | 73.8% | 88.6% |
| 4125972 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.85 | 60.0 | 6.59e-01 | 72.1% | 91.0% |
| 4533441 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 60.0 | 6.81e-01 | 73.8% | 97.9% |
| 4346134 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.84 | 62.0 | 6.76e-01 | 77.0% | 92.3% |
| 4437729 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.83 | 59.0 | 6.49e-01 | 73.0% | 92.0% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.83 | 59.0 | 6.29e-01 | 73.0% | 98.1% |
| 4067934 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 57.0 | 6.56e-01 | 70.5% | 100.0% |
| 4347676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 57.0 | 6.57e-01 | 71.3% | 100.0% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 58.0 | 6.32e-01 | 72.1% | 91.0% |
| 3998880 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 41.0 | 4.66e-01 | 83.6% | 72.6% |
| 3793383 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.69 | 37.0 | 4.95e-01 | 77.9% | 98.5% |
| 3793393 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 35.0 | 4.16e-01 | 76.2% | 83.7% |
| 4417464 | 3758.1.1.4 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TelA | 0.61 | 42.0 | 3.25e-01 | 100.0% | 33.7% |
| 3552989 | 604.8.1.1 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Smac_DIABLO | 0.61 | 47.0 | 4.12e-01 | 82.0% | 81.5% |
| None | — | 0.59 | 43.0 | 4.50e-01 | 92.6% | 83.5% | |
| 4140444 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.59 | 40.0 | 4.22e-01 | 92.6% | 77.3% |
| 4683324 | 101.1.1.26 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 | 0.59 | 42.0 | 4.45e-01 | 92.6% | 82.7% |
| None | — | 0.59 | 41.0 | 4.33e-01 | 91.8% | 82.9% | |
| None | — | 0.58 | 42.0 | 4.43e-01 | 94.3% | 83.6% | |
| 4211428 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.57 | 47.0 | 4.23e-01 | 87.7% | 99.4% |
| 3311361 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.57 | 38.0 | 4.04e-01 | 70.5% | 77.3% |
| 5037673 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 38.0 | 3.97e-01 | 71.3% | 84.5% |
| 5000679 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 39.0 | 4.11e-01 | 82.8% | 84.5% |
| 3828317 | 101.1.10.18 ↗ | alpha arrays › HTH › HTH › Cyclin-like › BRF2-like_C_cyclin_rpt | 0.51 | 35.0 | 3.37e-01 | 71.3% | 81.3% |