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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00369
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00369
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
rep: ON911717.1__UUV45355.1__X__00031__D56-111
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uzgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 61.0 | 4.81e-01 | 100.0% | 44.6% |
| 5uc6A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.69 | 59.0 | 4.38e-01 | 100.0% | 90.1% |
| 1hibA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 57.0 | 4.25e-01 | 100.0% | 95.3% |
| 1m2tB02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.64 | 54.0 | 4.30e-01 | 100.0% | 98.4% |
| 2vxtI00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.64 | 54.0 | 4.04e-01 | 100.0% | 94.2% |
| 1md6A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.63 | 53.0 | 3.96e-01 | 100.0% | 95.5% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.62 | 38.0 | 3.27e-01 | 87.5% | 38.6% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.60 | 51.0 | 4.15e-01 | 100.0% | 50.0% |
| 4cgyA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.59 | 51.0 | 3.96e-01 | 100.0% | 93.0% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 49.0 | 3.46e-01 | 100.0% | 31.3% |
| 1gh9A00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.55 | 42.0 | 3.91e-01 | 83.9% | 80.3% |
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.54 | 41.0 | 2.89e-01 | 89.3% | 78.4% |
| 3c4nA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.53 | 41.0 | 3.35e-01 | 91.1% | 64.8% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.52 | 37.0 | 3.38e-01 | 100.0% | 51.7% |
| 1r9lA02 | 3.40.190.100 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 | 0.52 | 42.0 | 3.18e-01 | 91.1% | 63.8% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.52 | 43.0 | 3.29e-01 | 100.0% | 97.3% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 40.0 | 3.02e-01 | 87.5% | 44.9% |
| 1o5wA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.52 | 41.0 | 2.83e-01 | 100.0% | 89.5% |
| 2j58A03 | 3.30.1950.10 | Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain | 0.51 | 42.0 | 3.89e-01 | 100.0% | 88.9% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.51 | 38.0 | 3.39e-01 | 89.3% | 95.8% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 2.43e-01 | 83.9% | 64.2% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 39.0 | 3.29e-01 | 91.1% | 88.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589021 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.72 | 62.0 | 4.83e-01 | 100.0% | 45.0% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 36.0 | 3.92e-01 | 87.5% | 60.0% |
| None | — | 0.63 | 53.0 | 4.22e-01 | 100.0% | 96.1% | |
| 3184485 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.62 | 46.0 | 3.79e-01 | 100.0% | 42.6% |
| 1175501 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 37.0 | 3.02e-01 | 87.5% | 30.6% |
| 3656580 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.58 | 41.0 | 2.97e-01 | 76.8% | 41.1% |
| 3684127 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 49.0 | 4.29e-01 | 100.0% | 96.5% |
| 1144168 | 6.1.1.20 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › IL33_bt | 0.56 | 45.0 | 3.39e-01 | 94.6% | 53.1% |
| 4554157 | 2007.1.4.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK | 0.53 | 42.0 | 2.89e-01 | 89.3% | 74.4% |
| 3926768 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.53 | 38.0 | 2.39e-01 | 78.6% | 40.3% |
| 4340545 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.53 | 44.0 | 2.77e-01 | 98.2% | 88.7% |
| 5082134 | 2002.1.1.43 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth | 0.53 | 41.0 | 2.79e-01 | 87.5% | 23.6% |
| 5030866 | 304.160.1.1 ↗ | a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF | 0.52 | 42.0 | 3.62e-01 | 100.0% | 73.3% |
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.52 | 37.0 | 3.79e-01 | 98.2% | 84.9% |
| 3479364 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.52 | 42.0 | 3.90e-01 | 100.0% | 95.0% |
| 4980224 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 38.0 | 3.05e-01 | 85.7% | 71.2% |
| 3794835 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.50 | 34.0 | 2.93e-01 | 71.4% | 81.0% |