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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00389
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00389
Identity
- Kingdom:
- phage
Quality
93.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-95
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.67 | 34.0 | 3.97e-01 | 82.1% | 68.1% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 39.0 | 4.16e-01 | 82.1% | 69.9% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 44.0 | 4.51e-01 | 83.2% | 73.4% |
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.64 | 39.0 | 4.11e-01 | 90.5% | 69.0% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.62 | 45.0 | 4.48e-01 | 75.8% | 93.9% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.60 | 42.0 | 3.67e-01 | 88.4% | 48.3% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.58 | 36.0 | 3.72e-01 | 78.9% | 65.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.58 | 42.0 | 4.24e-01 | 75.8% | 97.9% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 37.0 | 4.00e-01 | 91.6% | 77.2% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.57 | 47.0 | 4.49e-01 | 91.6% | 98.2% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.57 | 35.0 | 3.61e-01 | 82.1% | 64.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.57 | 31.0 | 3.95e-01 | 72.6% | 91.2% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 50.0 | 3.85e-01 | 98.9% | 70.8% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.56 | 41.0 | 3.99e-01 | 87.4% | 68.5% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 4.37e-01 | 86.3% | 90.2% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 32.0 | 3.51e-01 | 72.6% | 69.3% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 41.0 | 3.45e-01 | 78.9% | 91.4% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 3.90e-01 | 88.4% | 69.6% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.55 | 43.0 | 4.45e-01 | 100.0% | 89.0% |
| 3crjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 3.64e-01 | 87.4% | 57.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.55 | 40.0 | 4.29e-01 | 86.3% | 92.3% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 40.0 | 3.56e-01 | 77.9% | 82.0% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 47.0 | 3.65e-01 | 98.9% | 97.3% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 40.0 | 3.49e-01 | 77.9% | 79.9% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 35.0 | 3.92e-01 | 82.1% | 85.1% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.53 | 42.0 | 3.85e-01 | 85.3% | 82.2% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 4.54e-01 | 90.5% | 98.8% |
| 1imvA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 43.0 | 3.40e-01 | 89.5% | 42.7% |
| 2fd5A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.86e-01 | 86.3% | 70.5% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 38.0 | 3.15e-01 | 75.8% | 92.7% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 37.0 | 3.58e-01 | 86.3% | 61.7% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 37.0 | 3.24e-01 | 73.7% | 80.3% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.53 | 39.0 | 3.40e-01 | 80.0% | 51.0% |
| 1x4pA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.52 | 30.0 | 3.49e-01 | 97.9% | 81.8% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 35.0 | 3.84e-01 | 82.1% | 89.3% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 29.0 | 3.33e-01 | 93.7% | 74.3% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.51 | 38.0 | 3.92e-01 | 78.9% | 98.9% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 37.0 | 3.92e-01 | 84.2% | 86.9% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.50 | 37.0 | 3.55e-01 | 78.9% | 67.5% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 33.0 | 3.13e-01 | 76.8% | 54.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4116078 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 45.0 | 5.02e-01 | 87.4% | 93.3% |
| 5053839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 46.0 | 5.09e-01 | 91.6% | 100.0% |
| 4933155 | 198.1.1.27 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 | 0.61 | 46.0 | 4.86e-01 | 90.5% | 89.4% |
| 3576721 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.59 | 35.0 | 3.14e-01 | 77.9% | 40.0% |
| 4999401 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.59 | 39.0 | 4.12e-01 | 82.1% | 75.3% |
| 3308892 | 3273.1.1.9 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › AtTam38 | 0.59 | 38.0 | 3.44e-01 | 82.1% | 46.7% |
| 185297 | 6035.1.1.2 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C | 0.57 | 35.0 | 3.61e-01 | 82.1% | 64.0% |
| 4946780 | 563.2.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like › Cas_Cmr5 | 0.57 | 47.0 | 4.40e-01 | 92.6% | 100.0% |
| 3982476 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.57 | 46.0 | 4.26e-01 | 87.4% | 98.3% |
| 4938574 | 5050.1.1.87 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LPG_synthase_TM | 0.56 | 48.0 | 3.58e-01 | 100.0% | 93.5% |
| 3670628 | 244.3.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N | 0.56 | 44.0 | 3.76e-01 | 84.2% | 86.0% |
| 3658802 | 109.46.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd | 0.56 | 35.0 | 3.52e-01 | 81.1% | 62.1% |
| 1491760 | 5000.3.1.5 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Orthopox_A49R | 0.55 | 39.0 | 3.35e-01 | 71.6% | 100.0% |
| 4992317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.08e-01 | 100.0% | 67.2% |
| 3416186 | 3855.1.1.2 ↗ | alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › DM4_12 | 0.55 | 39.0 | 3.50e-01 | 94.7% | 52.2% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.54 | 40.0 | 4.17e-01 | 77.9% | 87.1% |
| 3282320 | 1075.1.1.22 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › MlaE | 0.54 | 45.0 | 3.27e-01 | 90.5% | 55.1% |
| 4048969 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.54 | 43.0 | 3.23e-01 | 86.3% | 67.2% |
| 3772062 | 109.4.1.809 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Codanin-1_C | 0.54 | 38.0 | 2.61e-01 | 100.0% | 21.5% |
| 3955428 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 41.0 | 2.98e-01 | 85.3% | 54.2% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.53 | 34.0 | 3.51e-01 | 80.0% | 68.9% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.52 | 39.0 | 3.35e-01 | 78.9% | 82.6% |
| 3302202 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.52 | 42.0 | 2.94e-01 | 88.4% | 66.8% |
| 3589591 | 601.32.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N | 0.52 | 36.0 | 3.86e-01 | 88.4% | 86.3% |
| 4309900 | 4982.1.1.1 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › KaiA | 0.52 | 34.0 | 3.11e-01 | 82.1% | 48.1% |
| 4965551 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.51 | 42.0 | 3.45e-01 | 90.5% | 78.9% |
| 5081023 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.51 | 38.0 | 2.84e-01 | 78.9% | 31.4% |
| 5014616 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.51 | 40.0 | 3.10e-01 | 85.3% | 81.4% |
| 3861518 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.50 | 39.0 | 4.03e-01 | 85.3% | 90.0% |