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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00398
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00398
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1reoA01 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.77 | 65.0 | 4.41e-01 | 100.0% | 51.1% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.72 | 51.0 | 5.40e-01 | 76.6% | 100.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 59.0 | 5.08e-01 | 100.0% | 72.4% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.68 | 58.0 | 4.12e-01 | 100.0% | 57.8% |
| 1wh3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 56.0 | 4.99e-01 | 100.0% | 90.1% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 48.0 | 4.18e-01 | 83.0% | 52.9% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.65 | 49.0 | 3.86e-01 | 89.4% | 39.6% |
| 2ylmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.65 | 53.0 | 4.40e-01 | 100.0% | 82.5% |
| 2fnjB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 53.0 | 4.32e-01 | 100.0% | 71.4% |
| 2dzmA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 53.0 | 4.74e-01 | 100.0% | 90.3% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 42.0 | 4.15e-01 | 80.9% | 64.7% |
| 3pf6A00 | 6.10.250.2290 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 44.0 | 4.15e-01 | 76.6% | 80.0% |
| 2kk8A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 51.0 | 4.58e-01 | 100.0% | 86.3% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 50.0 | 3.20e-01 | 100.0% | 46.2% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 45.0 | 4.55e-01 | 100.0% | 91.1% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 45.0 | 4.04e-01 | 83.0% | 89.9% |
| 5unlB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 49.0 | 3.06e-01 | 91.5% | 47.7% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 48.0 | 4.13e-01 | 100.0% | 91.8% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 51.0 | 4.32e-01 | 100.0% | 85.4% |
| 2o2kA01 | 3.10.196.10 | Alpha Beta › Roll › Cobalamin-dependent Methionine Synthase; domain 1 › Vitamin B12-dependent methionine synthase, activation domain | 0.59 | 51.0 | 3.22e-01 | 97.9% | 95.5% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 45.0 | 4.28e-01 | 100.0% | 70.5% |
| 4d05A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 40.0 | 3.54e-01 | 100.0% | 47.4% |
| 2qtsA02 | 2.60.470.10 | Mainly Beta › Sandwich › Acid-sensing ion channels like fold › Acid-sensing ion channels like domains | 0.57 | 46.0 | 3.07e-01 | 87.2% | 74.2% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 43.0 | 4.35e-01 | 89.4% | 83.0% |
| 3kyzA00 | 3.30.450.170 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component histidine kinase, sensor domain | 0.56 | 41.0 | 3.17e-01 | 80.9% | 85.7% |
| 3ucxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 2.88e-01 | 91.5% | 47.7% |
| 6djwA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 47.0 | 4.21e-01 | 100.0% | 84.7% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 46.0 | 4.03e-01 | 100.0% | 89.9% |
| 2krxA01 | 3.90.940.40 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 | 0.54 | 46.0 | 4.09e-01 | 100.0% | 97.2% |
| 4mt1A02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.54 | 43.0 | 3.53e-01 | 97.9% | 88.3% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.53 | 42.0 | 3.24e-01 | 100.0% | 81.2% |
| 3uzeC00 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.46e-01 | 100.0% | 45.7% |
| 3ehkA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 2.74e-01 | 87.2% | 19.7% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.53 | 41.0 | 3.00e-01 | 100.0% | 76.6% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 2.80e-01 | 100.0% | 25.5% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 40.0 | 3.86e-01 | 91.5% | 100.0% |
| 3vpbA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 42.0 | 3.81e-01 | 100.0% | 68.1% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 42.0 | 3.35e-01 | 100.0% | 80.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.74 | 65.0 | 5.26e-01 | 100.0% | 56.7% |
| None | — | 0.73 | 60.0 | 3.47e-01 | 100.0% | 19.4% | |
| 4062632 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.71 | 61.0 | 4.31e-01 | 100.0% | 61.3% |
| 3586991 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.70 | 50.0 | 4.16e-01 | 74.5% | 60.0% |
| 4442631 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.70 | 59.0 | 4.24e-01 | 100.0% | 59.3% |
| 3970204 | 304.41.1.0 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain | 0.69 | 58.0 | 4.16e-01 | 100.0% | 58.7% |
| 4064225 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.69 | 59.0 | 4.16e-01 | 100.0% | 30.3% |
| 3750234 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 50.0 | 5.06e-01 | 100.0% | 84.4% |
| 4280384 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.68 | 59.0 | 4.11e-01 | 100.0% | 56.4% |
| 4075391 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.68 | 55.0 | 3.97e-01 | 100.0% | 57.5% |
| 3606623 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 57.0 | 5.09e-01 | 100.0% | 85.7% |
| 4139791 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.67 | 55.0 | 3.95e-01 | 100.0% | 60.0% |
| 4988166 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.65 | 55.0 | 3.98e-01 | 100.0% | 56.0% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.64 | 56.0 | 4.65e-01 | 100.0% | 56.5% |
| 3617704 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 54.0 | 5.24e-01 | 100.0% | 87.3% |
| 4240243 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.64 | 53.0 | 3.81e-01 | 95.7% | 84.1% |
| 3859106 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 46.0 | 4.66e-01 | 100.0% | 86.7% |
| 4978071 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.61 | 50.0 | 3.04e-01 | 91.5% | 33.9% |
| 4534304 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.59 | 52.0 | 4.26e-01 | 100.0% | 72.2% |
| 4974415 | 207.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C | 0.59 | 48.0 | 2.97e-01 | 100.0% | 14.7% |
| 3471417 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.59 | 47.0 | 4.06e-01 | 100.0% | 66.3% |
| 4117250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 51.0 | 4.82e-01 | 95.7% | 94.5% |
| 3226694 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 46.0 | 3.50e-01 | 87.2% | 97.3% |
| 3231131 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 49.0 | 3.88e-01 | 100.0% | 91.4% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.57 | 43.0 | 2.94e-01 | 85.1% | 71.3% |
| 3259141 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.57 | 47.0 | 4.47e-01 | 100.0% | 96.7% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.56 | 47.0 | 4.47e-01 | 100.0% | 83.3% |
| 3990615 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.56 | 48.0 | 4.79e-01 | 100.0% | 94.0% |
| 4584323 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.56 | 47.0 | 4.36e-01 | 93.6% | 88.3% |
| 4980496 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.55 | 41.0 | 3.07e-01 | 89.4% | 40.0% |
| 3968758 | 278.1.1.0 ↗ | a+b complex topology › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | 0.55 | 41.0 | 3.21e-01 | 87.2% | 80.0% |
| 4067935 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.54 | 39.0 | 4.04e-01 | 93.6% | 84.4% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 45.0 | 3.44e-01 | 100.0% | 98.3% |
| 3744535 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.51 | 42.0 | 2.81e-01 | 87.2% | 20.0% |
| 4193698 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.51 | 37.0 | 3.51e-01 | 85.1% | 70.3% |
| 2530280 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.51 | 41.0 | 3.83e-01 | 93.6% | 96.7% |
| 3313678 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 39.0 | 2.89e-01 | 89.4% | 72.1% |