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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00469
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00469
Identity
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-155
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00151__D42-153
D2
high
residues 207-236_364-440
Domain cluster:
rep: KM983327.1__AJA42543.1__phiCT453A_53__00053__D161-268
D3
medium
residues 237-355
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.68 | 50.0 | 4.00e-01 | 76.5% | 69.4% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.68 | 49.0 | 4.61e-01 | 74.8% | 95.8% |
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.67 | 49.0 | 5.33e-01 | 76.5% | 91.8% |
| 2m5sA00 | 2.40.30.240 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 49.0 | 4.84e-01 | 74.8% | 100.0% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.62 | 43.0 | 4.87e-01 | 70.6% | 100.0% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.60 | 42.0 | 4.40e-01 | 72.3% | 100.0% |
| 4beuA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.60 | 45.0 | 3.93e-01 | 78.2% | 68.6% |
| 4xotA03 | 2.40.30.250 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 41.0 | 4.60e-01 | 71.4% | 97.7% |
| 7syvx01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 45.0 | 4.31e-01 | 80.7% | 81.8% |
| 2nv4A00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.59 | 41.0 | 3.99e-01 | 71.4% | 94.7% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 28.0 | 3.67e-01 | 70.6% | 84.4% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.58 | 41.0 | 4.20e-01 | 72.3% | 94.6% |
| 4v15A01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.57 | 40.0 | 3.76e-01 | 72.3% | 66.7% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 41.0 | 2.81e-01 | 74.8% | 25.4% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 4.06e-01 | 84.9% | 91.8% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.54 | 39.0 | 3.61e-01 | 77.3% | 87.7% |
| 5yycA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.54 | 44.0 | 4.25e-01 | 88.2% | 80.0% |
| 5h4cB00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 3.71e-01 | 74.8% | 97.0% |
| 7wsoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.87e-01 | 82.4% | 88.2% |
| 4eclA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.53 | 44.0 | 4.06e-01 | 89.1% | 78.8% |
| 3kw3B01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.52 | 43.0 | 4.07e-01 | 89.1% | 78.2% |
| 2b5iC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.84e-01 | 89.1% | 90.6% |
| 1hn0A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.50 | 37.0 | 3.25e-01 | 77.3% | 87.5% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973332 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 47.0 | 5.80e-01 | 73.9% | 100.0% |
| 4026674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.73 | 48.0 | 5.72e-01 | 73.1% | 100.0% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 44.0 | 5.03e-01 | 73.9% | 82.2% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 42.0 | 4.81e-01 | 70.6% | 77.8% |
| 3103203 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.69 | 49.0 | 5.59e-01 | 77.3% | 97.8% |
| 3172185 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 48.0 | 5.01e-01 | 71.4% | 87.3% |
| 3332862 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.69 | 49.0 | 5.47e-01 | 73.9% | 93.7% |
| 4946634 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 47.0 | 5.33e-01 | 71.4% | 94.4% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 44.0 | 4.69e-01 | 76.5% | 75.2% |
| 4221218 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.67 | 42.0 | 4.69e-01 | 89.9% | 78.9% |
| 4402716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 44.0 | 5.05e-01 | 75.6% | 94.1% |
| 199114 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.67 | 48.0 | 4.95e-01 | 75.6% | 78.6% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 45.0 | 5.03e-01 | 89.1% | 91.1% |
| 3291083 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.66 | 48.0 | 5.50e-01 | 89.1% | 100.0% |
| 3517651 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 38.0 | 4.69e-01 | 71.4% | 90.7% |
| 3415428 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.65 | 46.0 | 4.85e-01 | 72.3% | 90.5% |
| 4074297 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 45.0 | 4.64e-01 | 72.3% | 73.0% |
| 4854964 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.63 | 42.0 | 4.82e-01 | 73.1% | 94.2% |
| 1005534 | 1.1.7.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FlgT_C | 0.62 | 43.0 | 4.89e-01 | 71.4% | 100.0% |
| 4403870 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.62 | 42.0 | 4.66e-01 | 78.2% | 88.4% |
| 3571974 | 1.1.7.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift | 0.61 | 45.0 | 4.56e-01 | 75.6% | 83.5% |
| 4010630 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.61 | 46.0 | 3.12e-01 | 79.8% | 21.9% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 46.0 | 4.77e-01 | 79.0% | 96.4% |
| 4939996 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.60 | 43.0 | 4.60e-01 | 74.8% | 92.4% |
| 3369214 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.60 | 44.0 | 4.57e-01 | 76.5% | 96.4% |
| 3250056 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.23e-01 | 73.1% | 90.4% |
| 4625449 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.79e-01 | 73.9% | 100.0% |
| 4931402 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 44.0 | 4.56e-01 | 76.5% | 92.7% |
| 3273490 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.59 | 44.0 | 4.39e-01 | 76.5% | 96.7% |
| 3247934 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.59 | 43.0 | 4.72e-01 | 74.8% | 100.0% |
| 1714447 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.58 | 48.0 | 4.64e-01 | 95.8% | 79.5% |
| 4882197 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.57 | 40.0 | 4.08e-01 | 78.2% | 72.9% |
| 3671396 | 4.1.1.316 ↗ | beta barrels › SH3 › SH3 › SH3 › PUB62-63_C | 0.56 | 33.0 | 4.10e-01 | 73.1% | 94.5% |
| 2387805 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 38.0 | 3.99e-01 | 73.1% | 79.0% |
| 3619352 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 37.0 | 3.41e-01 | 72.3% | 69.4% |
| 3616755 | 11.1.1.818 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_2nd | 0.53 | 38.0 | 3.32e-01 | 76.5% | 49.4% |
| 4530320 | 11.1.5.89 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 | 0.53 | 37.0 | 3.53e-01 | 72.3% | 68.6% |
| 3263949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.80e-01 | 90.8% | 86.3% |
| 4209875 | 1.1.7.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C | 0.51 | 41.0 | 3.95e-01 | 85.7% | 83.0% |
D4
medium
residues 665-808