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RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00488
Bact-VirRTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00488
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-87
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.75 | 50.0 | 5.85e-01 | 70.2% | 100.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 47.0 | 4.65e-01 | 72.6% | 77.0% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 44.0 | 4.51e-01 | 73.8% | 73.1% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.66 | 46.0 | 4.95e-01 | 72.6% | 100.0% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 46.0 | 4.58e-01 | 98.8% | 71.6% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 46.0 | 4.61e-01 | 79.8% | 76.2% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 44.0 | 4.64e-01 | 75.0% | 85.9% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.63 | 45.0 | 3.62e-01 | 77.4% | 76.2% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 43.0 | 3.84e-01 | 71.4% | 61.0% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 43.0 | 3.73e-01 | 76.2% | 90.5% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.58 | 38.0 | 4.25e-01 | 72.6% | 91.9% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.57 | 37.0 | 4.15e-01 | 72.6% | 94.9% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 30.0 | 3.19e-01 | 98.8% | 59.2% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 44.0 | 4.32e-01 | 100.0% | 84.8% |
| 2fq4A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 4.01e-01 | 97.6% | 81.0% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.54 | 42.0 | 4.14e-01 | 84.5% | 86.8% |
| 3tejA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 2.62e-01 | 100.0% | 20.0% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 33.0 | 2.95e-01 | 85.7% | 44.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 32.0 | 2.97e-01 | 98.8% | 51.0% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 41.0 | 3.11e-01 | 89.3% | 79.0% |
| 2id3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.73e-01 | 97.6% | 81.0% |
| 2iaiA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 44.0 | 3.80e-01 | 97.6% | 84.6% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.51 | 41.0 | 3.88e-01 | 94.0% | 73.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067099 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.77 | 52.0 | 4.36e-01 | 72.6% | 43.0% |
| 4026729 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.72 | 53.0 | 4.46e-01 | 77.4% | 50.0% |
| 5060192 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 44.0 | 4.87e-01 | 86.9% | 81.5% |
| 4972260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 4.88e-01 | 86.9% | 66.3% |
| 3222309 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 46.0 | 5.26e-01 | 85.7% | 96.7% |
| 3932319 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.66 | 45.0 | 4.31e-01 | 85.7% | 61.1% |
| 3226552 | 148.1.3.5 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N | 0.66 | 44.0 | 4.76e-01 | 70.2% | 81.4% |
| 3848681 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.66 | 46.0 | 5.04e-01 | 85.7% | 93.8% |
| 4559316 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.65 | 45.0 | 4.88e-01 | 86.9% | 87.1% |
| 5033596 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.64 | 57.0 | 4.40e-01 | 100.0% | 59.1% |
| 3503580 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.64 | 44.0 | 4.01e-01 | 71.4% | 55.7% |
| 5078213 | 3896.1.2.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase | 0.64 | 57.0 | 4.71e-01 | 100.0% | 76.0% |
| 3610001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 45.0 | 4.46e-01 | 73.8% | 94.4% |
| 3278005 | 142.1.1.7 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Phosphatase-like_N | 0.64 | 42.0 | 4.61e-01 | 71.4% | 87.7% |
| 3281755 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.62 | 43.0 | 4.76e-01 | 73.8% | 100.0% |
| 3787705 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.61 | 55.0 | 4.01e-01 | 100.0% | 53.3% |
| 3743127 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 50.0 | 5.14e-01 | 100.0% | 97.5% |
| 3389599 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.60 | 30.0 | 2.69e-01 | 90.5% | 33.3% |
| 4525381 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.59 | 48.0 | 3.67e-01 | 94.0% | 60.5% |
| 3248839 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 38.0 | 3.45e-01 | 70.2% | 70.8% |
| 3831316 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 46.0 | 4.35e-01 | 88.1% | 85.0% |
| 3724618 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.56 | 44.0 | 4.26e-01 | 100.0% | 75.0% |
| 4011386 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.56 | 44.0 | 4.21e-01 | 100.0% | 75.0% |
| 3167220 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.55 | 42.0 | 4.10e-01 | 100.0% | 75.3% |
| 5042653 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.55 | 46.0 | 4.45e-01 | 100.0% | 83.2% |
| 4027781 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.54 | 43.0 | 4.18e-01 | 100.0% | 78.9% |
| 3297453 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.54 | 42.0 | 4.13e-01 | 88.1% | 78.9% |
| 5052475 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.54 | 40.0 | 3.58e-01 | 82.1% | 68.5% |
| 4024445 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.52 | 42.0 | 3.64e-01 | 90.5% | 85.0% |
| 3240014 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.52 | 42.0 | 4.08e-01 | 97.6% | 79.8% |
| 3831 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.52 | 32.0 | 2.97e-01 | 98.8% | 51.0% |
| 3772061 | 109.4.1.809 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Codanin-1_C | 0.51 | 41.0 | 2.70e-01 | 86.9% | 30.3% |
| 3776468 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.50 | 36.0 | 2.81e-01 | 77.4% | 78.0% |