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Rad5-like_protein
Euk-VirPandoravirus_inopinatum
Rad5-like_protein__YP_009120552__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009120552 ↗
- Protein ID:
- Rad5-like_protein
- Kingdom:
- euk
Quality
69.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-80
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ng2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 50.0 | 5.00e-01 | 87.9% | 64.2% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.74 | 43.0 | 4.55e-01 | 83.3% | 65.5% |
| 4r2yC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 43.0 | 4.39e-01 | 81.8% | 67.7% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 49.0 | 3.82e-01 | 100.0% | 41.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3240391 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.83 | 43.0 | 5.69e-01 | 83.3% | 97.1% |
| 3311349 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.78 | 44.0 | 4.24e-01 | 81.8% | 49.3% |
| 3858618 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 42.0 | 3.94e-01 | 78.8% | 47.5% |
| 3546355 | 376.1.3.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_RING_Vps8 | 0.70 | 43.0 | 4.33e-01 | 77.3% | 61.5% |
| 3260447 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 43.0 | 3.41e-01 | 84.8% | 31.5% |
| 3861347 | 376.1.1.122 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING_Vps8 | 0.69 | 42.0 | 4.38e-01 | 77.3% | 66.7% |
| 3227165 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.67 | 42.0 | 3.59e-01 | 86.4% | 39.4% |
| 3535412 | 377.10.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › A20-like zinc finger › A20-like zinc finger › zf-AN1 | 0.67 | 39.0 | 4.42e-01 | 81.8% | 78.0% |
| 3618279 | 376.1.1.122 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING_Vps8 | 0.66 | 42.0 | 4.40e-01 | 77.3% | 71.7% |
| 3213277 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.64 | 39.0 | 4.36e-01 | 77.3% | 82.0% |
| 3723443 | 145.1.1.4 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › ASXH | 0.60 | 37.0 | 3.26e-01 | 93.9% | 39.0% |
D2
high
residues 115-245_322-330
Domain cluster:
rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00271.38 best | Helicase_C | 58.8 | 8.10e-16 | 81.4% | 95.5% |