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RdRp,_partial
Euk-VirCarnation_yellow_fleck_virus
RdRp,_partial__YP_008858531__Carnation_yellow_fleck_virus__940280
Identity
- Accession:
- YP_008858531 ↗
- Protein ID:
- RdRp,_partial
- Kingdom:
- euk
Quality
83.0
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Carnation_yellow_fleck_virus
TaxID: 940280
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-98
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6zzx601 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.57 | 39.0 | 2.70e-01 | 72.4% | 73.7% |
D2
medium
residues 99-189_235-285
Domain cluster:
rep: RdRp,_partial__YP_762622__Strawberry_chlorotic_fleck-associated_virus__399314__D41-159_203-257
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 79.0 | 4.70e-22 | 64.8% | 20.2% |
| PF00978.27 | RdRP_2 | 41.3 | 1.40e-10 | 35.9% | 11.4% |
D3
medium
residues 190-234_286-374
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 113.2 | 2.00e-32 | 67.2% | 20.2% |
| PF00978.27 | RdRP_2 | 32.6 | 5.70e-08 | 35.1% | 9.3% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jxsA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.79 | 72.0 | 7.05e-01 | 95.5% | 100.0% |
| 1gx5A03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.79 | 64.0 | 6.69e-01 | 84.3% | 100.0% |
| 6qwtA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.78 | 71.0 | 7.00e-01 | 96.3% | 100.0% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.76 | 71.0 | 4.66e-01 | 100.0% | 48.6% |
| 1khvA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.76 | 60.0 | 6.10e-01 | 82.1% | 100.0% |
| 7uinD01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.72 | 62.0 | 5.77e-01 | 92.5% | 97.6% |
| 4hkqA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.67 | 55.0 | 5.44e-01 | 91.8% | 82.6% |
| 1hi8A03 | 3.30.70.1600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 60.0 | 5.44e-01 | 96.3% | 88.6% |
| 4ol8A01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 50.0 | 5.07e-01 | 90.3% | 80.0% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.65 | 37.0 | 4.71e-01 | 73.9% | 100.0% |
| 3cjsA00 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.65 | 31.0 | 4.31e-01 | 72.4% | 100.0% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 48.0 | 5.11e-01 | 88.8% | 93.1% |
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 40.0 | 4.75e-01 | 70.1% | 100.0% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.61 | 42.0 | 3.85e-01 | 70.1% | 83.4% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.61 | 47.0 | 3.85e-01 | 79.9% | 63.2% |
| 4aukA01 | 3.30.70.2810 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 36.0 | 4.38e-01 | 74.6% | 100.0% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 47.0 | 4.13e-01 | 83.6% | 90.8% |
| 3pjxA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 52.0 | 4.72e-01 | 98.5% | 82.3% |
| 4zmuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 51.0 | 4.89e-01 | 96.3% | 88.4% |
| 2c5sA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.58 | 44.0 | 4.05e-01 | 79.1% | 65.1% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 47.0 | 4.18e-01 | 86.6% | 90.5% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.58 | 37.0 | 4.26e-01 | 76.1% | 93.4% |
| 6pwjA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 51.0 | 4.76e-01 | 97.0% | 81.2% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 43.0 | 4.55e-01 | 79.1% | 86.9% |
| 4i0wA00 | 3.30.70.2980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 30.0 | 3.50e-01 | 76.9% | 70.7% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.57 | 36.0 | 4.15e-01 | 73.9% | 89.5% |
| 2cfxA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.56 | 37.0 | 4.39e-01 | 93.3% | 100.0% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.55 | 39.0 | 4.46e-01 | 76.9% | 100.0% |
| 3n28A02 | 3.30.70.2020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.34e-01 | 95.5% | 93.4% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.54 | 35.0 | 4.06e-01 | 75.4% | 95.7% |
| 1sb7A01 | 3.30.2350.20 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain | 0.53 | 40.0 | 3.52e-01 | 79.9% | 74.4% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.36e-01 | 83.6% | 99.2% |
| 3gqcC01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 45.0 | 4.51e-01 | 93.3% | 96.4% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.52 | 35.0 | 4.01e-01 | 71.6% | 96.8% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.81e-01 | 78.4% | 72.9% |
| 3ungC01 | 3.30.70.2220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster | 0.51 | 39.0 | 3.30e-01 | 82.1% | 73.3% |
| 1ad2A01 | 3.30.190.20 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain | 0.50 | 34.0 | 3.55e-01 | 77.6% | 76.0% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3495499 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.74 | 65.0 | 4.90e-01 | 94.0% | 60.3% |
| 3479114 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.73 | 64.0 | 4.10e-01 | 95.5% | 71.7% |
| 3185440 | 304.48.1.10 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS | 0.72 | 50.0 | 4.11e-01 | 70.1% | 85.2% |
| 4950570 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.70 | 36.0 | 4.86e-01 | 71.6% | 100.0% |
| 4215083 | 304.48.1.10 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS | 0.67 | 50.0 | 5.11e-01 | 77.6% | 80.8% |
| 3333353 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.66 | 38.0 | 4.78e-01 | 70.9% | 100.0% |
| 1179696 | 304.138.1.0 ↗ | a+b two layers › Alpha-beta plaits | 0.65 | 33.0 | 4.40e-01 | 74.6% | 95.5% |
| 4946642 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.63 | 44.0 | 2.73e-01 | 71.6% | 59.6% |
| 4262041 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 52.0 | 4.27e-01 | 94.0% | 67.1% |
| 3490318 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 42.0 | 4.54e-01 | 70.1% | 88.2% |
| 4980947 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 39.0 | 4.67e-01 | 70.9% | 97.8% |
| 141464 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.60 | 49.0 | 4.41e-01 | 87.3% | 98.4% |
| 3357604 | 304.9.1.83 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RBM39linker | 0.60 | 41.0 | 4.43e-01 | 75.4% | 84.5% |
| 3408002 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.59 | 42.0 | 4.63e-01 | 73.9% | 94.5% |
| 4579957 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.59 | 45.0 | 4.47e-01 | 81.3% | 100.0% |
| 4980945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 39.0 | 4.31e-01 | 72.4% | 85.7% |
| 3404332 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.58 | 35.0 | 4.12e-01 | 76.9% | 87.8% |
| 4682714 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 32.0 | 4.15e-01 | 71.6% | 100.0% |
| 4319667 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.58 | 41.0 | 3.84e-01 | 73.1% | 88.8% |
| 4008806 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.58 | 52.0 | 4.78e-01 | 98.5% | 75.4% |
| 4399122 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.58 | 51.0 | 4.83e-01 | 98.5% | 90.9% |
| 4467337 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.58 | 43.0 | 4.29e-01 | 78.4% | 100.0% |
| 4115819 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.58 | 51.0 | 4.76e-01 | 98.5% | 88.2% |
| 5004531 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.57 | 47.0 | 3.98e-01 | 87.3% | 68.4% |
| 4319410 | 304.15.1.7 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › DUF5609 | 0.57 | 36.0 | 4.32e-01 | 77.6% | 98.8% |
| 3947751 | 304.48.1.14 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF | 0.57 | 51.0 | 4.32e-01 | 98.5% | 66.7% |
| 5225 | 304.1.1.2 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › Xol-1_GHMP-like | 0.57 | 44.0 | 3.95e-01 | 81.3% | 83.4% |
| 3291429 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 51.0 | 4.84e-01 | 98.5% | 84.4% |
| 4285081 | 304.48.1.14 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF | 0.57 | 51.0 | 4.62e-01 | 98.5% | 77.8% |
| 3974380 | 304.154.1.0 ↗ | a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain | 0.57 | 43.0 | 4.34e-01 | 98.5% | 79.3% |
| 5055915 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 38.0 | 4.41e-01 | 73.9% | 100.0% |
| 3164278 | 304.8.1.25 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 | 0.56 | 36.0 | 4.26e-01 | 76.1% | 96.7% |
| 3280378 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 48.0 | 4.57e-01 | 96.3% | 87.3% |
| 5051481 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 36.0 | 4.13e-01 | 70.1% | 89.5% |
| 4975729 | 304.48.1.112 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SatD | 0.56 | 41.0 | 4.18e-01 | 77.6% | 77.8% |
| 4373473 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.56 | 42.0 | 4.11e-01 | 78.4% | 100.0% |
| 4968297 | 304.4.1.2 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase | 0.55 | 35.0 | 4.23e-01 | 70.1% | 100.0% |
| 4952886 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.55 | 37.0 | 3.96e-01 | 73.9% | 79.1% |
| 3280593 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.55 | 43.0 | 2.92e-01 | 83.6% | 51.3% |
| 3164568 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.55 | 40.0 | 3.78e-01 | 76.9% | 96.5% |
| 5041147 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.55 | 41.0 | 4.17e-01 | 79.1% | 85.9% |
| 4448178 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.55 | 42.0 | 4.10e-01 | 79.9% | 98.6% |
| 4987385 | 304.4.1.2 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase | 0.54 | 35.0 | 4.17e-01 | 70.1% | 97.8% |
| 4968114 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 44.0 | 3.92e-01 | 87.3% | 98.5% |
| 4993060 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.54 | 43.0 | 4.19e-01 | 85.8% | 91.3% |
| 3696675 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.53 | 38.0 | 4.24e-01 | 73.9% | 96.2% |
| 4856819 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 48.0 | 4.08e-01 | 97.8% | 90.6% |
| 3516259 | 304.8.1.25 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF5609 | 0.53 | 38.0 | 4.22e-01 | 81.3% | 96.2% |
| 3282301 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.53 | 41.0 | 3.70e-01 | 82.8% | 87.6% |
| 4963958 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.51 | 33.0 | 2.65e-01 | 74.6% | 32.6% |
| 4028983 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.51 | 34.0 | 3.46e-01 | 72.4% | 68.9% |
| 5052554 | 304.111.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C | 0.50 | 45.0 | 4.04e-01 | 99.3% | 98.4% |
D4
medium
residues 375-446
Domain cluster:
rep: RNA-dependent_RNA_polymerase,_partial__YP_009241367__Grapevine_leafroll-associated_virus_13__1815581__D413-491
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 48.0 | 1.20e-12 | 100.0% | 16.4% |