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RdRp,_partial

Euk-Vir

Goose_astrovirus

RdRp,_partial__YP_009362294__Goose_astrovirus__1349999

Identity

Accession:: YP_009362294 ↗
Protein ID:: RdRp,_partial
Kingdom:: euk

Quality

91.8 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Avastrovirus› Goose_astrovirus

TaxID: 1349999

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-104_122-231_271-330

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	37.5	1.80e-09	74.8%	38.0%
PF00680.26	RdRP_1	24.5	1.50e-05	24.8%	13.1%

D2 high residues 437-513

PDB

Domain cluster: rep: ORF1b,_partial__YP_005271208__Astrovirus_wild_boar_WBAstV-1_2011_HUN__1137931__D442-513

CATH (31)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.81	55.0	4.49e-01	70.1%	46.7%
3hiuD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.77	60.0	4.72e-01	81.8%	90.1%
2pusA04	6.10.140.300	Special › Helix non-globular › Helix Hairpins ›	0.76	66.0	5.90e-01	96.1%	96.3%
5nl6B01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.73	51.0	4.36e-01	72.7%	78.5%
1vs5O00	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.72	56.0	5.35e-01	83.1%	100.0%
3iu5A00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.72	50.0	4.45e-01	74.0%	73.7%
1lvfB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.70	49.0	4.45e-01	72.7%	91.3%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	51.0	4.97e-01	79.2%	81.2%
2lhrA00	1.20.58.1270	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	52.0	5.24e-01	81.8%	83.3%
1ax8A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.68	58.0	4.83e-01	92.2%	55.4%
2clbA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.66	51.0	4.08e-01	84.4%	93.1%
3a7rA02	3.30.390.50	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain	0.66	43.0	4.10e-01	74.0%	57.3%
2itbB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.65	51.0	3.84e-01	85.7%	78.8%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.64	51.0	4.47e-01	87.0%	85.6%
3eabE00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.63	47.0	4.59e-01	81.8%	97.7%
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.59	42.0	4.19e-01	74.0%	73.1%
2nrlA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	43.0	3.55e-01	79.2%	94.5%
2wzkA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.57	47.0	4.07e-01	92.2%	82.7%
3s63A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.56	40.0	3.84e-01	74.0%	72.7%
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.56	47.0	3.87e-01	92.2%	87.2%
4p1eA00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.56	40.0	2.71e-01	75.3%	84.1%
2i6hA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	49.0	4.58e-01	100.0%	80.2%
3rjvA02	1.25.40.740	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	41.0	4.42e-01	84.4%	96.9%
3frqB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	44.0	3.35e-01	87.0%	69.0%
1dqeA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.53	40.0	3.38e-01	81.8%	77.4%
4n8gD00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.52	43.0	2.84e-01	88.3%	97.8%
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.52	35.0	3.74e-01	70.1%	88.7%
2mx8A01	1.10.274.70	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain	0.52	42.0	3.81e-01	93.5%	82.3%
4amgB01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.51	41.0	3.03e-01	89.6%	72.0%
4n4uB00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.51	43.0	2.90e-01	93.5%	98.3%
1dgfA03	1.20.1370.60	Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain ›	0.50	42.0	3.77e-01	97.4%	79.8%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3620341	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.78	58.0	5.17e-01	77.9%	59.0%
1578946	4967.1.1.15 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Birna_VP1_thumb	0.77	70.0	5.34e-01	100.0%	68.8%
3518321	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.77	61.0	5.25e-01	83.1%	90.4%
3553881	109.4.1.243 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zmiz1_N	0.72	62.0	4.95e-01	92.2%	62.1%
3655480	109.4.1.1258 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2	0.68	56.0	4.08e-01	89.6%	40.0%
5024540	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.67	59.0	4.75e-01	96.1%	91.0%
1148169	7566.1.1.1 ↗	a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N,GTP-bdg_M	0.66	52.0	4.09e-01	83.1%	51.3%
3892941	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.66	48.0	3.20e-01	79.2%	61.5%
4804034	304.48.1.12 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol	0.65	57.0	4.86e-01	97.4%	89.5%
2323818	1191.1.1.1 ↗	alpha duplicates or obligate multimers › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253 protein YaeP › UPF0253	0.65	46.0	4.76e-01	74.0%	94.3%
4398486	109.4.1.451 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39	0.63	56.0	3.58e-01	100.0%	45.2%
3718287	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	53.0	4.15e-01	97.4%	60.6%
3939078	186.2.1.0 ↗	alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain	0.61	47.0	4.53e-01	85.7%	80.0%
3572779	3855.1.1.1 ↗	alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › SAA	0.60	50.0	4.48e-01	93.5%	80.0%
3677602	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.59	46.0	4.48e-01	84.4%	87.1%
3898876	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.59	43.0	3.54e-01	77.9%	91.7%
4654266	7531.1.1.1 ↗	a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase	0.59	41.0	2.87e-01	74.0%	57.4%
3908430	109.27.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK	0.58	48.0	4.54e-01	96.1%	76.8%
3925823	3651.1.1.1 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B	0.54	44.0	4.01e-01	93.5%	87.3%
5078327	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.51	41.0	3.45e-01	98.7%	51.1%
3486556	190.1.1.0 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box	0.51	35.0	3.45e-01	72.7%	65.9%

D3 medium residues 105-121_232-270_331-431

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333212__Beihai_astro-like_virus__1922353__D104-144_202-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	52.8	3.90e-14	65.0%	21.1%