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RdRp,_partial
Euk-VirStrawberry_chlorotic_fleck-associated_virus
RdRp,_partial__YP_762622__Strawberry_chlorotic_fleck-associated_virus__399314
Identity
- Accession:
- YP_762622 ↗
- Protein ID:
- RdRp,_partial
- Kingdom:
- euk
Quality
87.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Strawberry_chlorotic_fleck-associated_virus
TaxID: 399314
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 337-415
Domain cluster:
rep: RNA-dependent_RNA_polymerase,_partial__YP_009241367__Grapevine_leafroll-associated_virus_13__1815581__D413-491
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 50.8 | 1.80e-13 | 100.0% | 17.7% |
D2
high
residues 423-462
D3
medium
residues 41-159_203-257
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 82.9 | 3.20e-23 | 69.0% | 24.8% |
| PF00978.27 | RdRP_2 | 37.8 | 1.50e-09 | 32.2% | 12.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7v5yA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.56 | 19.0 | 3.21e-01 | 76.4% | 96.1% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 22.0 | 3.22e-01 | 72.4% | 94.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3938749 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 66.0 | 5.12e-01 | 100.0% | 64.9% |
| 3258406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.71 | 66.0 | 4.56e-01 | 100.0% | 42.3% |
| 4524063 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.70 | 65.0 | 4.38e-01 | 100.0% | 37.9% |
| 3878013 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 65.0 | 4.89e-01 | 100.0% | 59.0% |
| 3939319 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 65.0 | 4.91e-01 | 100.0% | 63.3% |
| 4188583 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.69 | 64.0 | 4.78e-01 | 100.0% | 53.7% |
| 3937215 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.68 | 63.0 | 4.79e-01 | 100.0% | 61.0% |
| 3382764 | 626.1.1.0 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) | 0.68 | 62.0 | 4.08e-01 | 98.3% | 33.1% |
| 3451410 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.68 | 62.0 | 4.54e-01 | 100.0% | 49.8% |
| 4456383 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.65 | 53.0 | 4.41e-01 | 85.6% | 67.9% |
| 3923013 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.64 | 59.0 | 4.70e-01 | 100.0% | 64.1% |
| 3287361 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.59 | 20.0 | 2.70e-01 | 72.4% | 55.8% |
| 4648894 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.55 | 23.0 | 2.72e-01 | 79.3% | 50.8% |
D4
medium
residues 160-202_258-336
Domain cluster:
rep: RdRp,_partial__YP_008858531__Carnation_yellow_fleck_virus__940280__D190-234_286-374
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 83.5 | 2.20e-23 | 66.4% | 17.9% |
| PF00978.27 | RdRP_2 | 31.4 | 1.30e-07 | 35.2% | 9.1% |