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RdRp

Euk-Vir

Diuris_virus_A

RdRp__YP_006908997__Diuris_virus_A__1247115

Identity

Accession:: YP_006908997 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

90.0 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Divavirus› Diuris_virus_A

TaxID: 1247115

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 330-398

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_001086452_RNA_dependent_RNA_polymerase__Chrysanthemum_virus_B__12165__D313-376

D2 medium residues 19-40_76-171

PDB

Domain cluster: representative

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5366	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.66	60.0	4.16e-01	100.0%	73.1%
4871000	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.62	55.0	4.33e-01	100.0%	71.7%
3920615	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.61	53.0	3.60e-01	97.5%	39.3%
3473558	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.59	49.0	4.03e-01	93.2%	66.1%
3254023	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	45.0	3.76e-01	81.4%	59.5%
3772920	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.56	49.0	3.70e-01	97.5%	57.0%
3768112	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.54	41.0	3.53e-01	81.4%	60.0%
3992452	150.5.1.74 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › CUX1_N	0.51	26.0	3.15e-01	71.2%	72.5%

D3 medium residues 41-75_204-255

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2g8lA02	1.10.285.20	Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2	0.67	32.0	3.69e-01	87.4%	60.0%
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.60	32.0	3.61e-01	88.5%	66.2%
1h7cA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	29.0	2.80e-01	80.5%	37.9%
2xokP00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.59	32.0	3.47e-01	89.7%	60.8%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.59	34.0	3.62e-01	87.4%	64.9%
2uuiA00	1.20.120.550	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain	0.57	40.0	3.37e-01	93.1%	41.3%
3m1tA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.57	44.0	3.14e-01	83.9%	97.0%
6fakA02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.55	39.0	3.99e-01	100.0%	80.2%
2kg7B00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.54	31.0	3.00e-01	88.5%	49.5%
4l8jA04	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.53	29.0	3.47e-01	89.7%	79.7%
1vf7A03	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.52	29.0	3.40e-01	89.7%	78.3%
1kxpD02	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.51	36.0	3.61e-01	100.0%	73.9%
3favD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.51	34.0	3.55e-01	79.3%	76.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3519089	101.1.17.3 ↗	alpha arrays › HTH › HTH › FF domain › RhoGAP-FF1	0.61	36.0	3.73e-01	86.2%	60.0%
3349371	3922.1.1.140 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Mlo	0.57	38.0	4.02e-01	85.1%	78.7%
4980315	2484.1.1.21 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG	0.56	45.0	3.16e-01	86.2%	31.2%
3808410	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.55	38.0	4.23e-01	97.7%	93.8%
3966335	2006.1.1.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like	0.54	39.0	2.94e-01	94.3%	29.6%
3681397	5059.1.1.17 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234	0.50	38.0	3.52e-01	83.9%	98.3%
3441963	605.1.1.222 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF4220	0.50	32.0	2.93e-01	79.3%	47.8%

D4 medium residues 172-203_256-329

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	43.4	3.00e-11	72.6%	16.4%