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RdRp
Euk-VirCamponotus_nipponicus_virus
RdRp__YP_009230208__Camponotus_nipponicus_virus__1765754
Identity
- Accession:
- YP_009230208 ↗
- Protein ID:
- RdRp
- Kingdom:
- euk
Quality
73.0
mean pLDDT
Cluster
View cluster (56 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 716-903
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.53 | 17.0 | 2.98e-01 | 86.2% | 86.7% |
D2
medium
residues 173-309
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.55 | 32.0 | 3.93e-01 | 75.9% | 87.8% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.55 | 36.0 | 3.79e-01 | 78.8% | 71.2% |
| 3wdoA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 42.0 | 3.05e-01 | 80.3% | 45.7% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 40.0 | 2.91e-01 | 74.5% | 69.9% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 27.0 | 3.18e-01 | 94.2% | 70.5% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.53 | 39.0 | 4.04e-01 | 77.4% | 96.8% |
| 2y8nA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 45.0 | 2.77e-01 | 92.7% | 62.7% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 37.0 | 4.21e-01 | 77.4% | 100.0% |
| 1n1fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 37.0 | 3.64e-01 | 81.0% | 66.7% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.50 | 35.0 | 3.10e-01 | 78.1% | 48.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3341764 | 174.1.1.49 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7733 | 0.55 | 47.0 | 4.17e-01 | 95.6% | 86.8% |
| 3976037 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 39.0 | 3.52e-01 | 80.3% | 88.5% |
| 3177732 | 70.3.1.19 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PF27829 | 0.51 | 42.0 | 3.28e-01 | 87.6% | 61.0% |
| 4987736 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 40.0 | 3.77e-01 | 84.7% | 97.0% |
D3
medium
residues 310-353_457-486_544-630
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
D4
medium
residues 354-456_487-543
D5
medium
residues 631-715
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.73 | 56.0 | 4.52e-01 | 80.0% | 80.5% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 51.0 | 4.51e-01 | 81.2% | 85.8% |
| 6i2mB02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.67 | 48.0 | 4.28e-01 | 75.3% | 89.3% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 49.0 | 4.10e-01 | 78.8% | 83.0% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.65 | 45.0 | 3.93e-01 | 77.6% | 47.3% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 43.0 | 3.63e-01 | 70.6% | 88.6% |
| 2wzkA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.63 | 45.0 | 4.02e-01 | 76.5% | 94.5% |
| 2b4vA02 | 3.30.460.50 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.63 | 44.0 | 3.93e-01 | 72.9% | 65.5% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 47.0 | 3.97e-01 | 81.2% | 91.9% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 54.0 | 5.05e-01 | 97.6% | 91.4% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.62 | 48.0 | 4.15e-01 | 97.6% | 53.7% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 44.0 | 4.47e-01 | 76.5% | 88.2% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.60 | 44.0 | 4.11e-01 | 76.5% | 84.6% |
| 1qqeA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 49.0 | 3.45e-01 | 90.6% | 31.0% |
| 7e9uA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 51.0 | 3.31e-01 | 98.8% | 51.1% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 41.0 | 4.46e-01 | 74.1% | 91.3% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.56 | 47.0 | 3.64e-01 | 96.5% | 81.9% |
| 1zs3A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 44.0 | 3.63e-01 | 92.9% | 82.5% |
| 2fonA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 44.0 | 3.88e-01 | 98.8% | 59.7% |
| 4i9cA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 47.0 | 3.50e-01 | 98.8% | 47.5% |
| 1iq0A03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 42.0 | 3.88e-01 | 90.6% | 79.3% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.52 | 43.0 | 3.82e-01 | 96.5% | 95.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3471234 | 3832.1.1.1 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 | 0.75 | 57.0 | 4.38e-01 | 81.2% | 42.7% |
| 3724445 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.73 | 55.0 | 4.09e-01 | 81.2% | 40.9% |
| 3261234 | 3832.1.1.1 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 | 0.73 | 56.0 | 4.27e-01 | 81.2% | 44.3% |
| 4548949 | 109.4.1.228 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C | 0.72 | 58.0 | 4.04e-01 | 85.9% | 35.4% |
| 3601444 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 54.0 | 3.46e-01 | 88.2% | 22.8% |
| 4953696 | 3843.1.1.37 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2109 | 0.64 | 48.0 | 4.95e-01 | 80.0% | 85.0% |
| 3737996 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 4.06e-01 | 97.6% | 73.3% |
| 3735339 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.61 | 46.0 | 3.28e-01 | 80.0% | 55.3% |
| 2637734 | 109.4.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dsl1_C | 0.61 | 54.0 | 3.72e-01 | 98.8% | 34.2% |
| 3961318 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.61 | 54.0 | 4.73e-01 | 100.0% | 90.0% |
| 3570983 | 6103.1.1.1 ↗ | alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd | 0.58 | 40.0 | 3.10e-01 | 77.6% | 29.5% |
| 3790050 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.58 | 49.0 | 3.21e-01 | 98.8% | 25.6% |
| 3707101 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 3.66e-01 | 98.8% | 48.0% |
| 4526672 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.57 | 49.0 | 4.80e-01 | 97.6% | 100.0% |
| 5040767 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.56 | 47.0 | 4.79e-01 | 94.1% | 100.0% |
| 3323364 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.53e-01 | 94.1% | 40.4% |
| 3526729 | 109.6.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N | 0.56 | 44.0 | 3.59e-01 | 89.4% | 59.4% |
| 4995391 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.55 | 42.0 | 4.12e-01 | 81.2% | 90.0% |
| None | — | 0.54 | 42.0 | 3.83e-01 | 87.1% | 71.7% | |
| 3632510 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 42.0 | 4.05e-01 | 91.8% | 78.0% |