RdRp

Euk-Vir

Norovirus_GIV

RdRp__YP_009238498__Norovirus_GIV__262897

Identity

87.9 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Caliciviridae› Norovirus› Norovirus_GIV

TaxID: 262897

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58

PDB

Domain cluster: rep: RdRp__YP_009701444__Norovirus_GI__122928__D8-59

D2 high residues 408-487

PDB

Domain cluster: rep: putative_3D_RNA-dependent_RNA_polymerase__YP_009553719__tremovirus_B1__2058161__D405-481

D3 medium residues 59-110_188-211_250-301

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1khvA04	6.10.140.320	Special › Helix non-globular › Helix Hairpins ›	0.82	33.0	5.16e-01	88.3%	92.6%
4omhB00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	34.0	2.73e-01	70.3%	100.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4871000	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.99	70.0	5.28e-01	72.7%	78.5%
1875037	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.91	87.0	5.94e-01	100.0%	63.6%
5078767	1076.1.1.1 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like	0.56	45.0	3.76e-01	86.7%	98.7%
4257453	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.54	40.0	4.13e-01	90.6%	80.8%

D4 medium residues 111-187

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	49.1	5.10e-13	100.0%	18.0%

D5 medium residues 212-249_302-405

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	63.5	2.20e-17	73.2%	22.7%