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RdRp

Euk-Vir

Arachis_pintoi_virus

RdRp__YP_009328892__Arachis_pintoi_virus__1921009

Identity

Accession:: YP_009328892 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

78.2 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Allexivirus› Arachis_pintoi_virus

TaxID: 1921009

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-272

PDB

Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	178.8	2.00e-52	98.5%	66.2%

D2 high residues 555-773

PDB

Domain cluster: rep: p39__YP_004928123__Hibiscus_green_spot_virus_2__1513278__D5-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	121.3	7.90e-35	63.0%	57.5%

D3 high residues 779-893

PDB

Domain cluster: rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	59.3	7.00e-16	78.3%	32.5%

D4 medium residues 1-69

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_010087744__Euonymus_yellow_mottle_associated_virus__2586645__D1-67

D5 medium residues 290-411

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009091814__Yam_virus_X__1503864__D297-399

D6 medium residues 968-987_1067-1113_1166-1199

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3631281	5055.1.1.18 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › DUF3435	0.53	35.0	3.69e-01	85.1%	75.6%
3427989	1008.1.1.0 ↗	alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain	0.52	28.0	3.31e-01	84.2%	75.7%

D7 medium residues 1114-1165_1200-1269

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D8 medium residues 1270-1354

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009091814__Yam_virus_X__1503864__D1288-1359