RdRp

Euk-Vir

Wuhan_insect_virus_23

RdRp__YP_009329882__Wuhan_insect_virus_23__1923727

Identity

93.0 mean pLDDT

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 382-465

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_007889823__Red_clover_cryptic_virus_2__1323524__D588-687

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pusA04	6.10.140.300	Special › Helix non-globular › Helix Hairpins ›	0.71	64.0	5.87e-01	100.0%	98.1%
2cwqA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.60	44.0	3.87e-01	94.0%	51.6%
3ccyA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	45.0	3.78e-01	88.1%	85.0%
3cqcA00	1.20.190.50	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 ›	0.56	49.0	3.58e-01	100.0%	72.1%
3qkxB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	41.0	3.34e-01	94.0%	97.2%
4mo7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	44.0	3.76e-01	100.0%	74.6%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3654409	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	48.0	4.42e-01	95.2%	68.2%
3606790	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.57	48.0	4.69e-01	94.0%	93.3%
3960407	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.56	44.0	3.85e-01	88.1%	94.8%
4949785	1075.1.1.3 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2	0.55	49.0	3.59e-01	100.0%	58.7%
3741521	109.46.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2)	0.51	44.0	3.88e-01	98.8%	65.6%

D2 medium residues 1-18_38-57_99-172_273-292

PDB

Domain cluster: rep: RdRp__YP_009337885__Hubei_tetragnatha_maxillosa_virus_8__1923250__D61-84_149-215_309-325

D3 medium residues 58-98_173-187_224-272

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009508058__Heterobasidion_partitivirus_3__631431__D106-145_229-253_299-368

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zs0A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	42.0	3.81e-01	74.3%	91.4%
3zhiA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.57	23.0	2.66e-01	81.0%	46.6%
1cqxA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	37.0	3.35e-01	76.2%	85.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3279834	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.56	40.0	3.67e-01	74.3%	90.0%
3335926	7023.1.1.2 ↗	alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12	0.56	40.0	3.95e-01	73.3%	92.7%

D4 medium residues 188-223_293-378

PDB

Domain cluster: rep: RdRp__YP_009329875__Hubei_partiti-like_virus_11__1923017__D203-236_315-377

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	38.3	9.70e-10	71.3%	21.1%