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RdRp

Euk-Vir

Beihai_sobemo-like_virus_1

RdRp__YP_009333507__Beihai_sobemo-like_virus_1__1922680

Identity

Accession:: YP_009333507 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

87.8 mean pLDDT

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-56_184-228_289-366

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	52.7	5.10e-14	56.9%	18.9%

D2 medium residues 57-183_229-288

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	39.7	4.20e-10	75.4%	15.5%

D3 medium residues 367-411

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cwhA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.74	62.0	4.31e-01	97.8%	34.0%
4cybD00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.74	63.0	4.31e-01	100.0%	77.2%
3u4qB04	6.10.140.1030	Special › Helix non-globular › Helix Hairpins ›	0.66	55.0	4.91e-01	100.0%	73.9%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.65	46.0	3.26e-01	75.6%	24.6%
5ffdA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.63	49.0	3.67e-01	95.6%	86.1%
1hssA00	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.61	47.0	3.70e-01	91.1%	67.6%
2oxlA00	1.20.5.5260	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.60	46.0	4.31e-01	95.6%	83.9%
1ze0A01	1.20.120.700	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ)	0.59	47.0	4.07e-01	100.0%	59.5%
6dnwA01	3.90.1750.20	Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2	0.59	45.0	3.57e-01	100.0%	64.2%
1nw9B00	3.40.50.1460	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.58	45.0	2.99e-01	97.8%	27.7%
4h79A00	1.10.520.40	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2	0.57	45.0	3.20e-01	100.0%	62.1%
5vjhB03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	46.0	3.07e-01	100.0%	31.5%
1ibcB00	3.30.70.1470	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like	0.55	37.0	3.10e-01	71.1%	58.0%
3ibyD02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	37.0	3.14e-01	71.1%	81.0%
1a41A01	3.90.15.10	Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3	0.53	40.0	3.19e-01	97.8%	67.7%
3amiA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.51	38.0	2.55e-01	84.4%	42.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
165192	150.1.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin	0.66	54.0	3.95e-01	97.8%	87.1%
3289584	316.2.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like	0.65	54.0	3.92e-01	100.0%	85.0%
1687881	2484.1.1.41 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK	0.63	51.0	3.02e-01	100.0%	49.7%
3473556	592.1.1.7 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091	0.59	47.0	4.30e-01	100.0%	68.6%
4950417	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.57	43.0	3.06e-01	97.8%	91.1%