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RdRp

Euk-Vir

Beihai_sobemo-like_virus_8

RdRp__YP_009336985__Beihai_sobemo-like_virus_8__1922705

Identity

Accession:
YP_009336985 ↗
Protein ID:
RdRp
Kingdom:
euk

Quality

70.4 mean pLDDT

Cluster

View cluster (38 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-127
PDB
D2 medium residues 130-143_237-325
PDB
Domain cluster: rep: trypsin-like_serine_protease-like_protein__YP_002321313__Oryctes_rhinoceros_nudivirus__92521__D215-339
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5pabH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 74.0 6.86e-01 96.1% 99.2%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 73.0 6.61e-01 95.1% 98.5%
3dfjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 73.0 6.64e-01 96.1% 99.3%
1buiA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 73.0 6.74e-01 95.1% 98.4%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 73.0 6.62e-01 96.1% 99.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 66.0 6.54e-01 86.4% 90.7%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 68.0 6.95e-01 96.1% 92.1%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 70.0 6.72e-01 99.0% 83.5%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 65.0 6.49e-01 86.4% 87.7%
1si5H01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 69.0 6.60e-01 95.1% 98.3%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 64.0 6.40e-01 86.4% 89.4%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 69.0 5.23e-01 95.1% 90.9%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 64.0 5.35e-01 86.4% 89.7%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 60.0 6.09e-01 84.5% 100.0%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 67.0 4.92e-01 96.1% 94.2%
3f1sB03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 60.0 5.84e-01 87.4% 90.4%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 60.0 6.07e-01 86.4% 85.6%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 59.0 5.92e-01 85.4% 86.7%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 54.0 5.80e-01 87.4% 90.9%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 58.0 5.92e-01 86.4% 89.2%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 55.0 5.06e-01 82.5% 94.1%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 59.0 5.80e-01 89.3% 84.3%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 61.0 6.21e-01 90.3% 96.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 56.0 5.04e-01 86.4% 97.2%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 56.0 4.53e-01 85.4% 93.2%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 56.0 4.81e-01 86.4% 87.4%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 55.0 4.66e-01 86.4% 89.3%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 54.0 5.02e-01 85.4% 93.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 54.0 4.75e-01 86.4% 92.2%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 54.0 4.85e-01 86.4% 94.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 54.0 5.22e-01 86.4% 92.1%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 53.0 5.01e-01 86.4% 96.0%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 51.0 4.62e-01 82.5% 92.8%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 52.0 4.20e-01 86.4% 91.7%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 50.0 4.51e-01 85.4% 91.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 40.0 4.08e-01 91.3% 72.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.55 40.0 3.26e-01 77.7% 97.0%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 4.09e-01 81.6% 80.6%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960372 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 59.0 6.45e-01 81.6% 88.2%
3479686 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.82 74.0 5.25e-01 96.1% 94.4%
3398931 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.82 74.0 5.40e-01 96.1% 90.2%
3515391 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 72.0 5.31e-01 95.1% 94.0%
3505030 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 71.0 5.16e-01 93.2% 88.1%
3879232 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 69.0 4.85e-01 89.3% 90.5%
3503759 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.81 70.0 5.11e-01 93.2% 86.4%
3731870 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 75.0 5.12e-01 100.0% 89.9%
3860815 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 74.0 5.27e-01 98.1% 83.8%
5051302 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 75.0 5.66e-01 99.0% 92.0%
3945667 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 74.0 5.49e-01 99.0% 92.2%
3893666 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 73.0 5.40e-01 99.0% 91.0%
3470154 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 68.0 5.24e-01 89.3% 59.0%
3240335 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.80 69.0 4.99e-01 92.2% 84.4%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.80 68.0 4.89e-01 91.3% 85.6%
3502140 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 73.0 5.43e-01 100.0% 98.4%
3507692 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 66.0 5.81e-01 89.3% 76.0%
3505835 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 69.0 5.06e-01 93.2% 90.2%
3397582 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 71.0 5.22e-01 95.1% 86.1%
3504279 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.79 68.0 4.98e-01 91.3% 89.4%
2526842 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 71.0 5.28e-01 96.1% 92.6%
3225260 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.79 72.0 5.18e-01 97.1% 87.5%
3576746 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 66.0 5.36e-01 89.3% 65.9%
3503044 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 68.0 5.51e-01 92.2% 86.5%
3517452 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 66.0 5.57e-01 89.3% 70.9%
3510405 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 67.0 5.26e-01 91.3% 86.8%
2868330 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.78 72.0 5.36e-01 99.0% 93.7%
3246192 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.78 69.0 4.98e-01 96.1% 87.5%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 69.0 5.11e-01 95.1% 78.8%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 61.0 5.91e-01 87.4% 74.8%
3772106 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.77 67.0 5.04e-01 91.3% 80.0%
3907134 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 66.0 5.08e-01 92.2% 88.6%
3867774 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 70.0 4.38e-01 98.1% 55.0%
5019852 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 67.0 5.16e-01 92.2% 48.6%
3501491 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 64.0 5.81e-01 89.3% 82.2%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.76 65.0 5.23e-01 89.3% 50.6%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.76 71.0 5.40e-01 100.0% 86.7%
3704634 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 65.0 4.71e-01 90.3% 65.7%
5039871 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 64.0 4.66e-01 89.3% 39.2%
1680525 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 67.0 5.17e-01 96.1% 94.1%
3443528 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 67.0 5.19e-01 95.1% 93.5%
3433009 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 67.0 4.92e-01 95.1% 78.4%
170199 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 64.0 4.96e-01 91.3% 93.5%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.75 70.0 5.08e-01 100.0% 88.1%
3234951 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.75 67.0 4.95e-01 96.1% 86.8%
3216440 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.75 68.0 4.99e-01 98.1% 86.5%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 63.0 4.47e-01 90.3% 40.7%
3913172 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 66.0 5.05e-01 96.1% 86.5%
3510207 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 63.0 5.03e-01 91.3% 75.3%
3964570 1.1.5.13 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.73 65.0 4.71e-01 97.1% 94.9%
3437290 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.72 64.0 4.94e-01 95.1% 93.5%
3434538 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.72 65.0 4.98e-01 96.1% 92.6%
3229859 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.71 60.0 4.47e-01 91.3% 87.5%
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.71 60.0 4.70e-01 90.3% 88.0%
305361 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.70 56.0 4.53e-01 85.4% 93.2%
3246847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 58.0 4.62e-01 89.3% 85.1%
4961061 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.68 54.0 4.75e-01 85.4% 92.9%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 58.0 4.35e-01 91.3% 86.3%
3180762 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.67 53.0 4.18e-01 85.4% 90.2%
4977711 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.66 53.0 4.72e-01 85.4% 86.9%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 56.0 4.49e-01 93.2% 92.5%
3641871 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 47.0 4.09e-01 79.6% 66.3%
4911687 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.63 55.0 4.81e-01 97.1% 90.4%
4852372 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.62 55.0 4.50e-01 98.1% 92.1%
1099000 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.61 55.0 4.50e-01 98.1% 93.5%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 39.0 4.50e-01 71.8% 90.7%
3512548 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 44.0 3.46e-01 78.6% 46.5%
4931814 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.56 49.0 4.39e-01 94.2% 100.0%
4215822 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.53 35.0 4.13e-01 78.6% 100.0%
3412618 11.1.4.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 0.52 40.0 3.76e-01 82.5% 88.5%
3290898 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.51 39.0 2.87e-01 80.6% 87.8%
3358389 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 35.0 3.42e-01 78.6% 64.9%
D3 medium residues 144-236_326-337
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009329993__Hubei_sobemo-like_virus_6__1923239__D113-207
D4 medium residues 477-556
PDB
Domain cluster: representative
D5 medium residues 557-604_839-911
PDB
Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D1-17_73-106_202-219_246-320
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 29.0 3.12e-01 86.0% 56.2%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.52 25.0 2.98e-01 80.2% 64.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.50 28.0 3.54e-01 85.1% 95.6%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.50 26.0 3.04e-01 80.2% 73.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952510 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.58 29.0 3.57e-01 86.0% 76.0%
3479114 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 47.0 3.00e-01 100.0% 74.4%
3690916 604.5.1.51 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF27980 0.52 27.0 3.21e-01 85.1% 74.7%
D6 medium residues 658-786
PDB
Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 26.0 3.05e-01 72.1% 59.8%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.54 40.0 2.72e-01 78.3% 71.0%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 4.18e-01 99.2% 77.9%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.52 32.0 3.68e-01 85.3% 84.6%
2uxwA02 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 30.0 3.14e-01 73.6% 62.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2541763 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.72 62.0 4.33e-01 100.0% 31.2%
5367 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.71 61.0 4.26e-01 100.0% 31.0%
None — 0.71 59.0 4.16e-01 100.0% 30.9%
1173784 304.48.1.8 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 0.70 58.0 4.08e-01 100.0% 30.6%
3250871 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.65 56.0 5.37e-01 96.1% 80.0%
3691350 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 56.0 4.40e-01 98.4% 46.7%
3267570 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 56.0 4.11e-01 100.0% 37.1%
D7 medium residues 824-838_912-968
PDB
Domain cluster: rep: polyprotein_P2a-P2b__YP_009140472__Cymbidium_chlorotic_mosaic_virus__1602124__D662-698_766-823
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kyzA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.81 61.0 6.29e-01 79.2% 100.0%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.78 64.0 4.71e-01 90.3% 47.6%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 60.0 5.97e-01 84.7% 97.3%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.76 60.0 5.74e-01 84.7% 100.0%
3w3sA01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 61.0 4.64e-01 88.9% 81.5%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.75 60.0 5.82e-01 87.5% 100.0%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 57.0 5.71e-01 83.3% 100.0%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.73 59.0 5.97e-01 88.9% 95.9%
2omlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.73 59.0 5.27e-01 90.3% 96.2%
3v8vA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.72 59.0 4.21e-01 90.3% 71.2%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.72 58.0 4.95e-01 91.7% 82.0%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.71 57.0 5.28e-01 88.9% 90.4%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.71 61.0 5.24e-01 97.2% 91.5%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.71 58.0 5.73e-01 88.9% 93.3%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 54.0 5.22e-01 83.3% 100.0%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.70 60.0 4.43e-01 97.2% 70.8%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.69 51.0 5.27e-01 83.3% 84.8%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 54.0 5.50e-01 87.5% 98.6%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 54.0 4.97e-01 87.5% 67.4%
2c2nA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 50.0 4.95e-01 81.9% 100.0%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 52.0 5.38e-01 84.7% 97.0%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.67 52.0 5.06e-01 87.5% 98.8%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.67 57.0 5.24e-01 95.8% 96.8%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.66 53.0 5.31e-01 90.3% 100.0%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 50.0 4.78e-01 83.3% 98.8%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 52.0 5.18e-01 88.9% 100.0%
2qa4G01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.65 50.0 4.41e-01 86.1% 83.5%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 47.0 4.65e-01 77.8% 100.0%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 5.13e-01 83.3% 98.5%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.65 54.0 4.20e-01 95.8% 91.8%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.64 51.0 5.18e-01 86.1% 91.4%
4ol8A01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 55.0 4.59e-01 100.0% 65.9%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 44.0 4.43e-01 73.6% 100.0%
2kviA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 48.0 4.74e-01 83.3% 98.7%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.64 49.0 4.52e-01 87.5% 98.0%
1uouA03 3.90.1170.30 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain 0.63 45.0 4.29e-01 76.4% 88.8%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 3.97e-01 81.9% 78.0%
1zu0A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.62 44.0 3.91e-01 75.0% 77.6%
2jfdA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.62 46.0 4.80e-01 83.3% 95.5%
3ruyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 44.0 3.65e-01 77.8% 69.2%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 47.0 4.86e-01 90.3% 91.0%
1wf1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 51.0 4.79e-01 94.4% 90.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.61 47.0 4.61e-01 84.7% 83.5%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.61 51.0 4.85e-01 93.1% 78.8%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 47.0 4.62e-01 86.1% 88.2%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.59 47.0 4.79e-01 97.2% 92.8%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.59 44.0 4.73e-01 83.3% 100.0%
1d1rA00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 43.0 4.15e-01 79.2% 77.1%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 4.70e-01 86.1% 97.0%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.58 42.0 4.54e-01 88.9% 91.7%
2vz8A03 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.58 49.0 3.25e-01 98.6% 39.9%
2x49A02 3.40.5.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 0.56 36.0 4.18e-01 70.8% 100.0%
4iknA01 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.55 44.0 3.65e-01 91.7% 90.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.48e-01 73.6% 87.0%
8oh9B05 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.89e-01 70.8% 91.7%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 36.0 3.05e-01 70.8% 56.0%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.53 36.0 3.57e-01 72.2% 65.4%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 43.0 3.64e-01 97.2% 66.4%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040118 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.81 67.0 6.86e-01 90.3% 100.0%
3959992 304.121.1.0 ↗ a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like 0.80 58.0 6.10e-01 77.8% 100.0%
3589166 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.77 56.0 6.00e-01 76.4% 100.0%
1556730 304.8.1.19 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HSD_C 0.77 60.0 5.56e-01 84.7% 79.3%
5036777 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.76 62.0 6.15e-01 88.9% 97.3%
4950570 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.76 62.0 6.51e-01 88.9% 100.0%
4949130 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.75 57.0 6.01e-01 81.9% 100.0%
5014609 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.75 62.0 6.45e-01 90.3% 100.0%
2507085 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.74 58.0 6.17e-01 87.5% 96.8%
5063368 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.74 55.0 5.86e-01 79.2% 100.0%
5004165 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 60.0 6.07e-01 88.9% 100.0%
5039770 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 55.0 5.97e-01 80.6% 100.0%
5060568 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 57.0 6.15e-01 83.3% 100.0%
3588994 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.73 57.0 6.12e-01 83.3% 100.0%
4974982 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.73 56.0 6.01e-01 81.9% 98.3%
4959403 304.147.1.0 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain 0.73 56.0 6.06e-01 83.3% 100.0%
5071628 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 61.0 6.23e-01 93.1% 100.0%
4242475 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.72 52.0 5.06e-01 76.4% 100.0%
5023503 304.110.1.0 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.72 58.0 5.92e-01 87.5% 95.7%
4661896 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.72 54.0 5.63e-01 80.6% 100.0%
5011032 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 56.0 6.00e-01 87.5% 100.0%
4206076 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.71 53.0 5.54e-01 80.6% 100.0%
4940504 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.71 55.0 5.96e-01 83.3% 100.0%
5013656 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 52.0 5.59e-01 77.8% 100.0%
4034485 304.120.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.70 53.0 5.44e-01 81.9% 85.7%
5041314 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.70 53.0 5.74e-01 81.9% 98.3%
3281827 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.70 55.0 5.77e-01 86.1% 100.0%
3280833 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.70 53.0 5.66e-01 80.6% 100.0%
3529282 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.70 61.0 4.34e-01 100.0% 55.5%
4177964 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.70 56.0 5.30e-01 87.5% 94.1%
4461494 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.69 56.0 5.84e-01 88.9% 100.0%
5035614 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 50.0 5.39e-01 77.8% 100.0%
4937175 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 53.0 5.53e-01 84.7% 100.0%
4502075 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.69 55.0 5.58e-01 88.9% 95.7%
4988867 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.68 54.0 5.59e-01 87.5% 100.0%
4556494 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.68 57.0 5.28e-01 93.1% 83.9%
5007943 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 57.0 5.77e-01 91.7% 95.7%
4586587 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.68 52.0 5.63e-01 91.7% 100.0%
5057658 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 50.0 5.37e-01 79.2% 100.0%
5012422 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 58.0 5.60e-01 94.4% 91.3%
3282379 304.163.1.4 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF30808 0.68 51.0 5.42e-01 81.9% 100.0%
4507546 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.68 52.0 5.29e-01 84.7% 98.6%
4931083 304.147.1.0 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain 0.68 52.0 5.59e-01 83.3% 100.0%
3590743 304.3.1.14 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C 0.67 52.0 5.46e-01 84.7% 100.0%
4568363 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.67 51.0 4.29e-01 83.3% 99.2%
3280640 304.4.1.59 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › WCX 0.66 49.0 4.93e-01 80.6% 84.0%
3601206 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.66 51.0 5.11e-01 86.1% 100.0%
3989567 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.66 49.0 5.22e-01 80.6% 100.0%
5012877 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 53.0 5.26e-01 87.5% 93.3%
3720261 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.65 51.0 3.91e-01 86.1% 50.0%
5024215 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.65 51.0 4.47e-01 88.9% 59.1%
5022446 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 51.0 5.36e-01 88.9% 98.5%
4032264 304.8.1.94 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DrrA1-3_C 0.65 51.0 5.36e-01 88.9% 100.0%
4321822 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.65 52.0 5.08e-01 91.7% 92.5%
5011764 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 54.0 5.25e-01 94.4% 92.5%
5010216 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 54.0 5.47e-01 93.1% 97.1%
5009657 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 53.0 5.38e-01 93.1% 100.0%
5026454 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.63 51.0 5.36e-01 91.7% 100.0%
5007506 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 49.0 4.68e-01 86.1% 82.4%
4960543 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.63 48.0 5.09e-01 87.5% 100.0%
4958791 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 47.0 5.05e-01 81.9% 100.0%
4179228 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.63 50.0 5.16e-01 87.5% 98.5%
3285818 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 46.0 4.82e-01 80.6% 96.9%
4941613 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.62 49.0 4.52e-01 88.9% 76.0%
2098117 304.56.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 0.62 49.0 4.53e-01 87.5% 71.6%
4070496 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 51.0 5.06e-01 94.4% 98.7%
4021179 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 51.0 3.08e-01 94.4% 51.3%
4949564 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.61 47.0 5.02e-01 87.5% 100.0%
5038109 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.60 43.0 3.49e-01 76.4% 93.1%
4952752 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 45.0 4.52e-01 83.3% 86.7%
4263624 304.7.1.3 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.60 46.0 3.71e-01 87.5% 80.0%
3963438 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.60 46.0 4.74e-01 84.7% 100.0%
3290985 304.169.1.3 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.60 46.0 4.59e-01 86.1% 81.3%
1016844 306.2.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.59 40.0 3.96e-01 72.2% 80.0%
3283098 304.169.1.3 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.54 39.0 3.82e-01 80.6% 75.3%
4979407 5103.1.1.0 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.54 43.0 3.84e-01 90.3% 88.2%
3310093 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.52 37.0 3.89e-01 84.7% 91.7%
4539039 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.52 41.0 3.44e-01 88.9% 74.8%
4947481 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.52 40.0 3.96e-01 88.9% 85.0%
3377090 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 40.0 3.85e-01 87.5% 76.5%
3089705 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.52 44.0 4.29e-01 95.8% 90.1%
3996803 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.51 40.0 3.37e-01 88.9% 58.5%
4412524 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.51 39.0 4.01e-01 86.1% 90.0%
3219532 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 39.0 3.23e-01 88.9% 55.9%
D8 medium residues 970-1029
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009336949__Beihai_sobemo-like_virus_9__1922706__D966-1030